Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G11
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   1.8  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   3.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   4.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 371 VITCRCITSLLSSNMSCVM 427
           VIT RCI+ LL+S++ C++
Sbjct: 37  VITARCISVLLASSVCCIL 55


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 238 RPQKTYNSKTRDPVVIERSNLVNISKLI 321
           +PQK  N    D  ++ +  L+ +SKL+
Sbjct: 250 KPQKNTNDSNNDHTLLSQDQLIELSKLV 277


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 181 PIERSSSSKDERWPELLISRPQKTYNSKTRDPVVIERSNLVNISKLIVKELI 336
           P   + SS+  +WP +   R +  YN       +I+  N  N +K   KE++
Sbjct: 37  PFGLNPSSRISQWPRITFIRAKDNYNPAEELCQLIDEQNAHNEAKHQSKEIM 88


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 205 KDERWPELLISRPQKTYNSKTRD--PVVIERSNLVNISKLIVKELIEQSLRFGRMLDSDH 378
           KDE   ELLI+ P   Y  K ++    VI   NL   +   + EL+E ++    +  S++
Sbjct: 408 KDEYGKELLITSPTVPYRIKYKNGREEVISNPNLFPTNHQGISELLEPTVDATIITPSEY 467

Query: 379 L 381
           L
Sbjct: 468 L 468


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 135 CTSITNIIYVFCQISSHRKI 194
           C SIT I+Y FC+I  ++ +
Sbjct: 84  CNSITVILYQFCKIRGYKAV 103


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 113 WHLQEKMMYKYHQHHLCLLSNLIPSKDLHLQKMKDGQNF*YRDHKKHITQKL 268
           WH+   M+YK+    LC  +++  SK    +K  +      R  +KH+ QK+
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSIETSK----KKDSELSQSQLRKREKHLEQKI 310


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 233 IRSSGHLSSFEDEDLSMG 180
           I SSG+L + +DED+S+G
Sbjct: 329 ILSSGNLENSDDEDVSLG 346


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -1

Query: 510  LRRILLNHL--KNIP*LLFRSEESLFRFESMTHDMF--EDNKEVMQRQVIT 370
            +R +L   L  ++IP L F++EES F F ++  + F   DN EV   Q ++
Sbjct: 2094 IREVLYPSLIYQDIP-LFFKAEESYFNFPAVKANAFIDPDNFEVNIEQTLS 2143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,067
Number of Sequences: 5004
Number of extensions: 46701
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)