Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G11
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229     29   2.4  
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548...    28   7.4  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    27   9.8  
03_06_0608 - 35039319-35039903,35040328-35040387                       27   9.8  

>07_01_1183 + 11250574-11250781,11250882-11251002,11251208-11251229
          Length = 116

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 594 RQSQPSPSAAHCCLHSWKISDTGRDIGCLRRI 499
           R   P  +A   C++  K+S + R IGC RR+
Sbjct: 27  RSGPPMVTACVSCVNDGKLSPSSRQIGCRRRL 58


>04_04_0605 +
           26549904-26551939,26553931-26554180,26554764-26554829,
           26555194-26555388,26555830-26556141,26556537-26556595,
           26557138-26557381,26557466-26557528,26557997-26558386
          Length = 1204

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 89  TTITTHFRXYKTNHFYLSIXSLRSKQNHS 3
           T +   F+   +NH  + I S++S QNHS
Sbjct: 148 TMLNPEFQDMNSNHIGVDINSMKSVQNHS 176


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 256 YMFFVVAISEVLAIFHLLKMKIFRWDEI*QKT*MMLVILVHHFLLQMPY 110
           Y+ FV+ +S      H+ ++KI+  +E  Q +   +V L+ HFL  +P+
Sbjct: 478 YVSFVILLSVSGVPAHIDEIKIYSHEEANQHS-STMVFLLGHFLSSIPF 525


>03_06_0608 - 35039319-35039903,35040328-35040387
          Length = 214

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 413 MSCVMDSNRKRDSSDLKRSYGIFFKWLRSIRLRQP 517
           + C +DS  K +   L   +GI  K LRS+ LR P
Sbjct: 156 LGCDLDSEVKLNVGKLDSDWGINGKTLRSLLLRNP 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,450
Number of Sequences: 37544
Number of extensions: 289435
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)