Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_G08
(488 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 115 7e-25
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 89 4e-17
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 84 1e-15
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 83 3e-15
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 75 6e-13
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 75 6e-13
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 68 1e-10
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 66 4e-10
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 59 6e-08
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 54 2e-06
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 49 5e-05
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing... 48 1e-04
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 40 0.022
UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2; ... 38 0.12
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 37 0.21
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 36 0.64
UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2; Thermoprot... 35 0.84
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 35 1.1
UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza sa... 34 1.5
UniRef50_Q8ZV51 Cluster: Ribosomal protein S30; n=11; Thermoprot... 33 3.4
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 115 bits (276), Expect = 7e-25
Identities = 60/132 (45%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Frame = +1
Query: 49 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXX-- 222
MQ+ ++G + H ++V+ + + Q+K + + ED LS G P
Sbjct: 1 MQVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPE 60
Query: 223 XXXXXXTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQ 402
V ++GGKVHGSLARAGKV+GQTPKVE TGRAKR + YNRRFVNVV
Sbjct: 61 LATLSLAVRVVGGKVHGSLARAGKVRGQTPKVEAQEKKKKKTGRAKRRMQYNRRFVNVVA 120
Query: 403 TFGRRRGPNSNS 438
FGRRRGPNSN+
Sbjct: 121 QFGRRRGPNSNA 132
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 89.4 bits (212), Expect = 4e-17
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = +1
Query: 262 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 438
KVHGSLARAGKV+GQTPKV TGRAKR + YNRRFVNVV TFG+++GPN+NS
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS 59
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 84.2 bits (199), Expect = 1e-15
Identities = 39/59 (66%), Positives = 45/59 (76%)
Frame = +1
Query: 262 KVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 438
KVHGSLARAGKV+GQTP V+ GRAKR I YNRRFVNVV TFG+++G N+NS
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANANS 59
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 83.0 bits (196), Expect = 3e-15
Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Frame = +1
Query: 49 MQLHIRG--QSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXX 222
MQ+ + G +TH LDV+ ++ IK I E+ ++S G+
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISY-GSKVLSEELTLGEC 54
Query: 223 XXXXXXTVP----LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFV 390
T+ LLGGKVHGSLARAGKV+ QTPKV+ GRA R + Y RR+V
Sbjct: 55 QIESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYV 114
Query: 391 NVVQTFGRRRGPNSNS 438
NV G++RGPNSNS
Sbjct: 115 NVASGPGKKRGPNSNS 130
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 75.4 bits (177), Expect = 6e-13
Identities = 49/130 (37%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Frame = +1
Query: 58 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXX---XXXX 228
H + Q H L V GQE + QIK + +L +D L L G P
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHVASLEG---KDQVLLLAGTPLEDEVTLGQCEVEALS 60
Query: 229 XXXXTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTF 408
+LGGKVHGSL AGKV+GQTPKV+ G+AKR YN FV VV
Sbjct: 61 TLEVVGRMLGGKVHGSLDCAGKVRGQTPKVD--KESKRRWGQAKRGTYYNPCFVKVVPHL 118
Query: 409 GRRRGPNSNS 438
+++G N +S
Sbjct: 119 KKKKGTNVSS 128
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 75.4 bits (177), Expect = 6e-13
Identities = 35/59 (59%), Positives = 42/59 (71%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSN 435
GKVHGSLARAGKV+GQTPKV GRA + + +NRRFV V FG++RGPNS+
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 68.1 bits (159), Expect = 1e-10
Identities = 36/64 (56%), Positives = 40/64 (62%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 438
GKVHGSLARAGKVK TPKVE GRA + + Y RRFVNV T G+R+ SN
Sbjct: 2 GKVHGSLARAGKVKSATPKVEKQEKKKEPKGRALKRLKYTRRFVNVTMTGGKRK-VRSNP 60
Query: 439 XIYK 450
YK
Sbjct: 61 ARYK 64
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 66.1 bits (154), Expect = 4e-10
Identities = 34/60 (56%), Positives = 38/60 (63%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 438
GKVHGSLARAGKVK QTPKVE GRA + + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 58.8 bits (136), Expect = 6e-08
Identities = 44/120 (36%), Positives = 55/120 (45%)
Frame = +1
Query: 79 HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXXXXXTVPLLG 258
H L V GQE + Q+K + +L + ED + L G P LG
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIPLEDEAT---------------LG 47
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 438
G A GKV+GQ PKV TGRAKR I Y+ FV VV TFG ++ N+NS
Sbjct: 48 --QCGVEAPHGKVRGQAPKVAKQEKQKKKTGRAKRWIQYHWHFVTVVPTFG-KKDLNTNS 104
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 53.6 bits (123), Expect = 2e-06
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFVN 393
GK+HGSLARAGKVK QTPKV GRA + + Y RRF++
Sbjct: 2 GKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLS 46
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 49.2 bits (112), Expect = 5e-05
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXX-TGRAKRTIXYNRRFVNVVQTFG----RRRG 423
GK+HG+LA+AGKV+ QTPK+E GRA + I +NRRF + +R+G
Sbjct: 2 GKLHGTLAKAGKVRKQTPKIEKQVRRHKIPKGRAYKRICFNRRFGSAAAAGAGPQQKRKG 61
Query: 424 PN 429
PN
Sbjct: 62 PN 63
>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S30 containing protein - Tetrahymena
thermophila SB210
Length = 80
Score = 47.6 bits (108), Expect = 1e-04
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXX-XXXXTGRAKRTIXYNRRFV-NVVQTF-GRRRGPN 429
G++HG+LA+AGKV+ QTPKVE GR+ + I YNRR+ +++ T +R+ PN
Sbjct: 2 GRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPN 61
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 40.3 bits (90), Expect = 0.022
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 49 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCG 183
MQL + Q H L+V GQE++ QIK + +L ++ ED + L G
Sbjct: 1 MQLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAG 45
>UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S30 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 37.9 bits (84), Expect = 0.12
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXX--TGRAKRTIXYNRRFV 390
GKVHG L RAGKV+ QT K E +GRA Y++R V
Sbjct: 2 GKVHGGLTRAGKVRNQTKKPEKVDTGKKKFPSGRAYLRYLYSKRMV 47
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 37.1 bits (82), Expect = 0.21
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 259 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAK 360
GKVHGSL RAGKV+ QT + +GRA+
Sbjct: 2 GKVHGSLTRAGKVRNQTKFIAKSDKKVKNSGRAR 35
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 35.5 bits (78), Expect = 0.64
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 43 TXMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 189
T +QL +R H L+V G E+ IK + +L ED + L G+P
Sbjct: 15 TDVQLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSP 63
>UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2;
Thermoprotei|Rep: Ribosomal protein S30E - Cenarchaeum
symbiosum
Length = 60
Score = 35.1 bits (77), Expect = 0.84
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 268 HGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRRFV 390
HGSL +AGKV+ QTPK+E R+ Y +R V
Sbjct: 4 HGSLTKAGKVRSQTPKIEGRKKTGTNASVQNRS-NYRKRLV 43
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 34.7 bits (76), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 58 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 189
++R + H L+V G E++ Q K + +L + ED + L G+P
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSP 47
>UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza
sativa|Rep: OSJNBb0048E02.10 protein - Oryza sativa
subsp. japonica (Rice)
Length = 423
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 66 RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 185
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>UniRef50_Q8ZV51 Cluster: Ribosomal protein S30; n=11;
Thermoprotei|Rep: Ribosomal protein S30 - Pyrobaculum
aerophilum
Length = 55
Score = 33.1 bits (72), Expect = 3.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 268 HGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRTIXYNRR 384
HGSL +AGKV+ QTPK+ T R + Y RR
Sbjct: 4 HGSLTKAGKVRNQTPKIP-AKPRKNLTPRRRNIRNYKRR 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,024,428
Number of Sequences: 1657284
Number of extensions: 7044295
Number of successful extensions: 15946
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15941
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -