Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G07
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.2  

>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 571 ISNCKEASIYSXACKIVK*IXINS 500
           +SN K+A IYS A   +  I +N+
Sbjct: 2   VSNTKQAFIYSLALLCLHAIFVNA 25


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 KNMTSFKNYTI*SIPNSLIKYNHFN*IWGNSNMSSSL 453
           K ++S  N TI    N+  KYN+ N  + N+N +  L
Sbjct: 79  KIISSLSNNTI---HNNNYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 343 KNMTSFKNYTI*SIPNSLIKYNHFN*IWGNSNMSSSL 453
           K ++S  N TI    N+  KYN+ N  + N+N +  L
Sbjct: 79  KIISSLSNNTI---HNNNYKYNYNNNNYNNNNYNKKL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,468
Number of Sequences: 438
Number of extensions: 1729
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)