Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G05
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...   120   5e-29
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...   116   8e-28
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   4.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   6.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   6.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   6.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   8.2  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    24   8.2  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score =  120 bits (290), Expect = 5e-29
 Identities = 58/102 (56%), Positives = 72/102 (70%)
 Frame = +3

Query: 33  MVQRLTFRRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 212
           M QR+T+RRRL+YNT+SN+  I++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 213 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 338
           E +RL + KKTV+R YGG L    VK RIVRAFLIE QKIVK
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score =  116 bits (280), Expect = 8e-28
 Identities = 56/102 (54%), Positives = 71/102 (69%)
 Frame = +3

Query: 33  MVQRLTFRRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 212
           M QR+T+RRRL+YNT+SN+  I++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 213 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVK 338
           E +RL + +K V+R YGG L    VK RIVRAFLIE QKIVK
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 231 YRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIVKVLK 347
           +R+K   R+ G ++C  C+K+     F+   Q  +KV +
Sbjct: 76  FRRKHHCRICGKIICKYCLKE--APGFIFRLQGSIKVCR 112


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 54  RRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPR 161
           RR  + N KS+++     PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 305 SDNALLDAFMAEDTTIDTFH 246
           SDNA +D  ++ED TI+  H
Sbjct: 83  SDNAAIDTDISEDETINQRH 102


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 159 RCGQCKSKLRGIQPARPAERSR 224
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
 Frame = +3

Query: 129 QYVKKPKKIPRCGQCKSKLRG-------IQPARPAERSR---LCYRKKTVKRVYG 263
           Q + K KK P C  C SK          I+ + P ++S+   LC R   V R YG
Sbjct: 659 QKILKLKKTPICRWCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYVWRYYG 713


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 103 GHRVAAWFISMSKSPR--RSQG 162
           GHR+ A+F++++  P   RS+G
Sbjct: 522 GHRIPAYFVNLADEPSQDRSEG 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,514
Number of Sequences: 5004
Number of extensions: 23739
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)