Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_G05
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 120 3e-28
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 2.3
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 28 2.3
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 2.3
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 27 3.9
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 5.2
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 26 6.9
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 26 6.9
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 26 6.9
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 26 6.9
Z73911-5|CAL49431.1| 329|Caenorhabditis elegans Hypothetical pr... 26 9.1
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 120 bits (289), Expect = 3e-28
Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Frame = +3
Query: 33 MVQRLTFRRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 212
M R+T+RRRLSYNT SN++ +V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 213 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEXQKIV-KVLKAQQ 356
L ++TV R YGG L VK+RI RAFL+E QKIV KV+K Q+
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIVNKVIKHQK 109
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 2.3
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 SKSLKMVQRLTFRRRLSYNTKSNQRXIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 194
S SL +V + RRR S ++S++R +VR+ G + + + R G+ +S R
Sbjct: 68 SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127
Query: 195 QPARPAERSR 224
+R RSR
Sbjct: 128 SRSRSRSRSR 137
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 18 SKSLKMVQRLTFRRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQ 197
S + +Q + + + + + ++ ++R G L YQ++ K + PR + +L G+
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNG-LDYQFLLKGHEDPRQDERVMQLFGLV 2376
Query: 198 PARPAERSRLCYRKKTVKR 254
A S C R T++R
Sbjct: 2377 NTLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 18 SKSLKMVQRLTFRRRLSYNTKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQ 197
S + +Q + + + + + ++ ++R G L YQ++ K + PR + +L G+
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNG-LDYQFLLKGHEDPRQDERVMQLFGLV 2379
Query: 198 PARPAERSRLCYRKKTVKR 254
A S C R T++R
Sbjct: 2380 NTLLANNSETCRRNLTIQR 2398
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 129 QYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 302
+YVK+ KIP+ K + ++P P + Y +T+ G VLC + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588
Query: 303 RAFLIEXQKIVKVL 344
R E + +L
Sbjct: 589 RLKQEELDAVTSIL 602
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 254 TFHCFLTVAKTGTFSRSSW 198
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 299 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 174
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 299 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 174
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 299 NALLDAFMAEDTTIDTFHCFLTVAKTGTFSRSSWLDTTEFAL 174
N ++D F+ E ++ + F +GT SS LD +FA+
Sbjct: 816 NGIVDYFLNESSSSPSIQLFRLDRTSGTLRVSSKLDREQFAV 857
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 33 MVQRLTFRRRLSYN--TKSNQRXIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 206
+V +LT +++ + TK+ + V P + +KKP K+PR + +G + A
Sbjct: 67 VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126
Query: 207 PAERSR 224
PA + +
Sbjct: 127 PAAKKK 132
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 177 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 272
+KL +P RP ++ R KT+K YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615
>Z73911-5|CAL49431.1| 329|Caenorhabditis elegans Hypothetical
protein T12A7.4a protein.
Length = 329
Score = 25.8 bits (54), Expect = 9.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 186 GVCSCIDHTLGSSW 145
G+C+C+ H LG +W
Sbjct: 200 GLCACVGHWLGVTW 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,657,181
Number of Sequences: 27780
Number of extensions: 141515
Number of successful extensions: 293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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