Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G04
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720...   136   1e-32
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369...   107   1e-23
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528...    28   7.4  
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767...    27   9.8  

>09_04_0657 +
           19271266-19271388,19271906-19271910,19272005-19272067,
           19272150-19272256,19272321-19272418,19273070-19273162,
           19273279-19273320,19273464-19273619
          Length = 228

 Score =  136 bits (330), Expect = 1e-32
 Identities = 67/150 (44%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
 Frame = +3

Query: 177 ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDA 356
           A I PS+L++D + L  E+ +++  GAD+LH+D+MDG FVPNLT G PV++ LR   K A
Sbjct: 7   AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-A 65

Query: 357 FFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKD-VIXVCRKVXEHGMXVGVAIKPGTP 533
           + + H+MV  P  ++ P+A AG + +TFHIE  +D    + + +   GM  GV+++PGTP
Sbjct: 66  YLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTP 125

Query: 534 VSEVEKYISIS---XMVLIMTVEPGFGGXK 614
           V EV   +       +VL+MTVEPGFGG K
Sbjct: 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQK 155


>03_01_0485 +
           3695857-3695951,3696489-3696597,3696746-3696886,
           3696986-3697099,3697558-3697636,3698163-3698272,
           3698344-3698400,3698520-3698609
          Length = 264

 Score =  107 bits (256), Expect = 1e-23
 Identities = 54/161 (33%), Positives = 94/161 (58%), Gaps = 4/161 (2%)
 Frame = +3

Query: 138 KIRSKTKMTRHLK--ALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTF 311
           ++R+ +++ +  K   ++ PSIL+A+ S+L E+ + +   G D++H+DVMDG+FVPN+T 
Sbjct: 36  RVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITI 95

Query: 312 GHPVVKCLRGKIKDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDV--IXVCRKV 485
           G  VV  LR  + D   + H+M+ +PEQ +     AG +  + H E    +       ++
Sbjct: 96  GPLVVDALR-PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQI 154

Query: 486 XEHGMXVGVAIKPGTPVSEVEKYISISXMVLIMTVEPGFGG 608
              G   GV + P TP++ ++  + +  +VLIM+V PGFGG
Sbjct: 155 KSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGG 195


>04_03_1031 + 21850857-21851009,21852229-21852350,21852447-21852891,
            21852981-21853087,21853192-21854524,21854632-21854859,
            21854951-21855181,21855278-21855537,21855651-21856113
          Length = 1113

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 183  IGPSILNADLSQLYEESQKLLDNGAD 260
            I P  L   +S+LY+   KLLDN AD
Sbjct: 972  IAPPELQNTISELYDALVKLLDNNAD 997


>01_06_1828 -
           40174446-40174543,40175031-40175171,40176518-40176719,
           40176815-40176914,40177029-40177081,40177951-40178097,
           40178184-40178341,40178509-40178599,40179415-40179522,
           40179815-40179952,40180154-40180246,40180342-40180434,
           40180528-40180637,40181087-40181135,40181324-40181437,
           40181530-40181589,40181674-40181742,40182034-40182135,
           40182235-40182263,40182348-40182630,40183574-40183960
          Length = 874

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 345 IKDAFFETHMMVEKPEQWITPMAD 416
           I+DAFF+  MM    ++ +TPM+D
Sbjct: 804 IRDAFFKRKMMTGVLDRCVTPMSD 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,733
Number of Sequences: 37544
Number of extensions: 235305
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)