Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G04
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   167   5e-42
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    30   1.6  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  167 bits (407), Expect = 5e-42
 Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
 Frame = +3

Query: 171 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 347
           L+  + PSILNADL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHPVV+ LR  + 
Sbjct: 3   LRPFVCPSILNADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLG 62

Query: 348 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIXV---CRKVXEHGMXVGVAI 518
            + FF+ H+MV  P QW+ PMA AG +Q+TFH E V   + V     K+ + GM VG+++
Sbjct: 63  AEPFFDVHLMVSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSV 122

Query: 519 KPGTPVSEVEKYISISXMVLIMTVEPGFGGXK 614
           KPGT V  + K+ +     LIMTVEPGFGG K
Sbjct: 123 KPGTSVEHILKHANHLDNALIMTVEPGFGGQK 154


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 604 PNPGSTVIIKTMXDIEIYFSTSE-TGVPGFIATPTFIPCSXTFLH 473
           P+P +  II +M  +EI FS    TG   F   P+FI  S  FLH
Sbjct: 5   PSPPAP-IITSMETVEIEFSAKVFTGFQLFYGVPSFIIMSVLFLH 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,304
Number of Sequences: 27780
Number of extensions: 230944
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)