Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G03
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    57   8e-10
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   2.8  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    24   6.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   6.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   8.6  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   8.6  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 57.2 bits (132), Expect = 8e-10
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKP---RQDQARIHPCAWIQNF*GIKGFATKGNLKPAKQ 219
           MAKSKNHTNHNQN+KAHRNGIK+P   R D  +     + +N    + FA +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRN----QKFANRGTVEAIRQ 56


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 50  WQSQRIIQIITKTAKLTEMVSKSQGKTRHESTLAHGSKIFKESKVLQRRVT*SQPS 217
           W    +IQ I    +LT MV  +Q        L   +KI+ ES  L  R     PS
Sbjct: 585 WDVDGVIQCIDDMEQLTAMVQFAQKTEGEVKKLFIKAKIYFESLSLDERGNLKVPS 640


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
          TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 57 LCHFDEFSIHFESED 13
          +CHF+E SI  ES++
Sbjct: 1  MCHFNELSIEIESKN 15


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5    LVLSSDSKWIENSSKWQSQRIIQ 73
            L+  + S+W   S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 11  LSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGKT 130
           L S +   ENS+K +     Q+   T   TEMVS +  K+
Sbjct: 135 LESRNNRDENSAKREKNNSHQVEADTNNATEMVSSNAKKS 174


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 22  FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRQ 126
           +K+D  +  +AK  +  NHN ++ A +  I +PR+
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,925
Number of Sequences: 5004
Number of extensions: 20377
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)