Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G03
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0661 - 16726958-16726966,16727133-16727234                       50   8e-07
01_02_0115 - 11248021-11248101,11249017-11249118                       50   8e-07
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   0.86 
08_01_0349 - 3082700-3083407                                           29   1.5  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     27   3.5  
08_01_0350 - 3087631-3088461                                           27   4.6  
09_03_0181 + 13149531-13149601,13150772-13151126,13152527-131526...    26   8.1  
07_01_0031 + 251818-252867                                             26   8.1  

>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRQ 126
           MAKSKNHT HNQ+ KAH+NGIKKP++
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKR 26


>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRQ 126
           MAKSKNHT HNQ+ KAH+NGIKKP++
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKR 26



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 153 MDPKFLRNQRFCNEG*PEASQATRE 227
           MDPKFLRNQR+  +   ++ +A  E
Sbjct: 35  MDPKFLRNQRYSRKHNKKSGEAESE 59


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 86   TAKLTEMVSKSQGKTRHESTLAHGSKIFKESKVLQRRVT*SQPSNSRGRLREKLPEKQ 259
            TA+ T    K  G T  E  +  G   F+ESK +    +  QPS  R R    LP+++
Sbjct: 1202 TAEDTSRQPKRTGSTPTEKAVQDGRDAFRESKSVDSTSSTQQPSGYR-RAAASLPKQE 1258



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 86   TAKLTEMVSKSQGKTRHESTLAHGSKIFKESKVLQRRVT*SQPSNSRGRLREKLPEKQ 259
            TA+ T   S     T  E  + +G   F ESK +    +  QPS+ R R    LP+++
Sbjct: 1993 TAEDTSKQSTRTASTPSEKAVPYGRDAFIESKSVDSTSSREQPSDVR-RAAASLPKQE 2049


>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 138 SCLVLPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESED 13
           SC V  WLF  I +  A L M+C +  L  + E+    + ED
Sbjct: 180 SCPVFLWLFGPIPMFAACLAMVCALYFLDVYTEWDKADDEED 221


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 228 PRELLGWLQVTLRCKTFDSLKILDP 154
           PR   G+L+ +LRCK     ++LDP
Sbjct: 64  PRSTRGYLRTSLRCKQETVRQVLDP 88


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 138 SCLVLPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESED 13
           SC V  WLF  I +  + L M+C +  L  + E+    E E+
Sbjct: 200 SCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEKPEEEE 241


>09_03_0181 +
           13149531-13149601,13150772-13151126,13152527-13152634,
           13152698-13152775,13154828-13154915,13156777-13157177
          Length = 366

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +2

Query: 53  QSQRIIQIITKTAKLTEMVSKSQGKTRHESTLAHGSKIFKESKVLQRRVT 202
           Q + ++ +I +  K+  +V  ++ +   E    HG K+F  S+    + T
Sbjct: 65  QGELMVVLIERHGKMVHVVKLNEQRMEWEKYSLHGQKVFTGSQTTMMKKT 114


>07_01_0031 + 251818-252867
          Length = 349

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 129 PGTNPPLRMDPKFL-RNQRFCNEG*P 203
           PG +PPL++D  +  R ++ C EG P
Sbjct: 229 PGADPPLKLDGAYADRLRKQCKEGAP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,699
Number of Sequences: 37544
Number of extensions: 129985
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)