Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G03
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 55  KSKNHTNHNQNRKAH 99
           +  NH NHN N+  H
Sbjct: 420 QDNNHYNHNHNQARH 434


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 40  LIKMAKSKNHTNHNQNRKAHRN 105
           LI   +  N  N N N+  H N
Sbjct: 577 LIMNTRCANSDNQNNNQNKHNN 598


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 168 KILDPCARVDSCLVLPWLFDTISVSFA 88
           ++LD  A    CL+    F+ I++S+A
Sbjct: 443 QLLDSYAVSGFCLLFLMFFECIAISWA 469


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 168 KILDPCARVDSCLVLPWLFDTISVSFA 88
           ++LD  A    CL+    F+ I++S+A
Sbjct: 496 QLLDSYAVSGFCLLFLMFFECIAISWA 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,818
Number of Sequences: 438
Number of extensions: 1502
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)