Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_G02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    29   0.59 
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    29   0.77 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   7.2  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 269 HAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKVPAL 427
           HAH  +   W+V   L    + +E R V+  K  +Q + E+ A+NP  +VP L
Sbjct: 9   HAHGPNP--WKVVQALKELDLTYETRYVNFSKN-EQKSPEHLALNPNGRVPTL 58


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 266 LHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKVPAL 427
           L++H      W+V   L   ++ +E    D  K G+Q  +E+ A+NP  +VP L
Sbjct: 6   LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQK-GEQKCKEHLALNPNGRVPTL 58


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 207 QQFFAPFLFTIVFSLERIYTIYFVRI*FDISY 112
           QQ+   + F  VF ++ +++++F  + F I Y
Sbjct: 90  QQYHGKWYFIRVFGIQELFSVFFSMLNFMIHY 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,172
Number of Sequences: 5004
Number of extensions: 39442
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)