Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_G02
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0046 + 7711536-7711568,7711685-7711850,7712251-7712339,771... 52 4e-07
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 50 1e-06
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576... 47 2e-05
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575... 45 5e-05
03_01_0249 - 1935355-1935827,1936129-1936330 33 0.15
02_05_0920 + 32735552-32735962,32736572-32736805 30 1.4
04_03_1007 - 21670780-21671368,21671477-21671685 29 2.4
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436 28 5.6
10_08_0712 + 20075931-20076263,20076378-20076761 27 9.9
>11_02_0046 +
7711536-7711568,7711685-7711850,7712251-7712339,
7712443-7712514,7712807-7712860,7713000-7713075,
7713238-7713299,7713445-7713504,7713663-7713773
Length = 240
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +2
Query: 239 ATMVESRVILHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKV 418
A E R+ L++ W SSCS+RVR L K + +E +P++++ +Q E+ +NP + V
Sbjct: 19 AAAPERRLKLYSFWRSSCSYRVRIALSLKGLDYEYKPINLL-ANEQSHPEFEKLNPMKYV 77
Query: 419 PALEIG 436
PAL G
Sbjct: 78 PALVDG 83
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Frame = +2
Query: 239 ATMVESRVILHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKV 418
A + +++ L+++W SSCS RVR L+ K + +E + V+++K G+ E+ +NP + V
Sbjct: 7 AAVAPAKLGLYSYWRSSCSHRVRIALNLKGLEYEYKAVNLLK-GEHSDPEFMKVNPMKFV 65
Query: 419 PALEIG 436
PAL G
Sbjct: 66 PALVDG 71
>12_01_0675 +
5759641-5759722,5760247-5760291,5760690-5760775,
5760888-5760959,5761210-5761263,5761385-5761460,
5761778-5761839,5762174-5762233,5762331-5762432
Length = 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +2
Query: 245 MVESRVILHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKVPA 424
M S+ IL+ W+SSCS R+R +L+ K + +E + V+ + +Y INP + +PA
Sbjct: 1 MASSKPILYGAWISSCSHRIRIVLNLKGVDYEYKSVN-----PRTDPDYEKINPIKYIPA 55
Query: 425 LEIG 436
L G
Sbjct: 56 LVDG 59
>12_01_0674 +
5755523-5755613,5756325-5756366,5756830-5756915,
5757008-5757079,5757450-5757525,5757765-5757826,
5758119-5758178,5758293-5758394
Length = 196
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 239 ATMVESRVILHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKV 418
A +++ +L++ W+SSCS+RVR L+ K I +E R V + +Y INP + V
Sbjct: 2 AAAEKTKPVLYSEWMSSCSYRVRIALNLKGIDYEYRAV------TRGDPDYGKINPIKYV 55
Query: 419 PALEIG 436
PAL G
Sbjct: 56 PALVDG 61
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 260 VILHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKVPALE 430
V ++ +S RV A L K +PF+ PVD+ K G+ + + + P +VPA +
Sbjct: 5 VTVYGPMISPAVARVAACLLEKDVPFQVEPVDMSK-GEHKSPSFLKLQPFGQVPAFK 60
>02_05_0920 + 32735552-32735962,32736572-32736805
Length = 214
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 527 SSWSWRTRVTIRSLWAHYSYGSY 459
SSWSWR +VT+ ++H Y Y
Sbjct: 169 SSWSWRQKVTMEHHFSHQFYAVY 191
>04_03_1007 - 21670780-21671368,21671477-21671685
Length = 265
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 266 LHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQKVPALEIG 436
L+ H S S +VR L K I + V+ + TGK + + +NP+ K+P + G
Sbjct: 3 LYHHPYSLDSQKVRMALEEKGIDYTSYHVNPL-TGKNMNVAFFRMNPSAKLPVFQNG 58
>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
Length = 79
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 329 IPFEXRPVDIVKTGKQLTEEYRAINPAQKVPALEIG 436
I FE VD+ K + L+ E++ INP +VPA+ G
Sbjct: 28 IDFEEVTVDLFKR-EHLSPEFKKINPMGQVPAIVDG 62
>10_08_0712 + 20075931-20076263,20076378-20076761
Length = 238
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 LHAHWLSSCSWRVRAMLHAKSIPFEXRPVDIVKTGKQLTEEYRAINPAQK-VPAL 427
L HW S+ RV+ LH K + +E D+ + ++ A NP K VP L
Sbjct: 12 LLGHWASAYVTRVKLALHLKGVSYEYVEEDL----RNKSDLLLASNPVHKTVPVL 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,333
Number of Sequences: 37544
Number of extensions: 233673
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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