Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F24
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 128 3e-31
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 126 1e-30
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.37
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 27 0.86
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 1.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 2.0
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 26 2.6
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 2.6
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 3.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 3.5
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 4.6
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 25 6.1
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 6.1
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 8.0
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 128 bits (309), Expect = 3e-31
Identities = 55/91 (60%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Frame = +2
Query: 59 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 232
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60
Query: 233 RCKRTVXGGAWVFSTTAASSCRSAVRRLREV 325
CK+ + GGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 126 bits (305), Expect = 1e-30
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Frame = +2
Query: 59 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 232
M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K
Sbjct: 1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60
Query: 233 RCKRTVXGGAWVFSTTAASSCRSAVRRLREV 325
C +T+ GGAW +T AA+S RS +RRLRE+
Sbjct: 61 GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 28.7 bits (61), Expect = 0.37
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 107 VCHICQ*FQPFWYVWPFW*TDSDTK 33
+ ++ Q FQ WY WPF ++D K
Sbjct: 1251 IVYLVQDFQRLWYHWPFLSVENDDK 1275
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 0.86
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 249 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 145
T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 70 TSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 8 WLFFFLCQLLYRSRFTKMAKRTKKVGI---TGKYGTRYGA 118
WL + ++YR F K K +VG G YG YGA
Sbjct: 449 WLSINVSYIIYRLAFKKQGKSYDEVGYHSPFGIYGACYGA 488
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 155 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 244
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 190 GCYETFLCRHLVL*AMQEDCXRRSLGILH 276
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 142 LFDHFT*RGTVTCAIFASNSNLFGT 68
+FD FT +T I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 3.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +1
Query: 16 FFSLSTFVSESVYQNGQTYQKGWNYWQI 99
FFS++ + +Y +T GWN++ +
Sbjct: 50 FFSIALVIITQIYVGYKTKNIGWNFFSV 77
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 67 FGHFGKPTPIQKLTEKKK 14
FGHF KP PI ++ + K
Sbjct: 273 FGHFEKPKPIDRVKKPNK 290
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 246 VLLHRLQDQMPTQERFIASLPQNEQV 169
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 164 KYTCSFCGKDAMKRSCVGIWSCKRCKR 244
KY C CG + C I S RC +
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMK 136
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 6.1
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 6 VGFFFFSVNFCIGVGLPKWPNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSIL--AH 179
+ FF + + CI + +W N+ ++ L ++ + +Y W K P Q + H
Sbjct: 153 LSFFSYGLQVCIEKNMIRWANLGYTIQTLWQGFYMVLAVY--WVKHRDFPIVQCVFFTLH 210
Query: 180 FVVRML*NVLVS-ASGLVSDARGLXQE 257
V ++ S G +S+ R L E
Sbjct: 211 CAVLIMKQFSYSHHMGYISEIRILHNE 237
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 204 RFIASLPQNEQVYFA 160
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,639
Number of Sequences: 5004
Number of extensions: 30765
Number of successful extensions: 98
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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