Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F24
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 129 7e-31
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 128 2e-30
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 29 1.9
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 2.5
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 28 3.3
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 4.4
08_02_0514 + 18021365-18022527,18023489-18023660 27 4.4
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 129 bits (312), Expect = 7e-31
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +2
Query: 56 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 235
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 236 CKRTVXGGAWVFSTTAASSCRSAVRRLRE 322
C + GGA+ +T +A + RS +RRLRE
Sbjct: 85 CGKVKAGGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 128 bits (309), Expect = 2e-30
Identities = 56/86 (65%), Positives = 66/86 (76%)
Frame = +2
Query: 65 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 244
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C +
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92
Query: 245 TVXGGAWVFSTTAASSCRSAVRRLRE 322
GGA+ +T +A + RS +RRLRE
Sbjct: 93 VKAGGAYTMNTASAVTVRSTIRRLRE 118
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 LYRSRFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSC 211
+ +SRF ++V K G Y L K AKYT G A RS
Sbjct: 62 MMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDRSS 121
Query: 212 VGIWSCKRCKRTV 250
G SCK ++ V
Sbjct: 122 AGAVSCKLREKNV 134
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 182 CGKDAMKRSCVGIWSCKRCKRTVXGGAWVFSTTAASSCRSAVRRLR 319
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 13 FFFSLSTFVSESVYQNGQTYQKGWNYWQ 96
FFFS S + S+ +N Q+GWN ++
Sbjct: 162 FFFSYSYHIMRSLQKNLSDPQEGWNIYE 189
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 146 EVTQHAKYTCSFCGKDAM 199
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>08_02_0514 + 18021365-18022527,18023489-18023660
Length = 444
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 1 KLLAFFFSLSTFVSESVYQNGQTYQKGWNYWQIWHTLRC 117
+L A FF +T +Y +G WN W I + + C
Sbjct: 312 QLCATFFC-NTLQQVCIYMSGDVMDPDWNCWHIINFMNC 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,363
Number of Sequences: 37544
Number of extensions: 197345
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -