Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F23
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 128 6e-31
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 128 6e-31
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 116 2e-27
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 116 2e-27
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 116 2e-27
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 71 9e-14
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 40 3e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 40 3e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 0.001
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 31 0.15
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 26 4.4
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 26 4.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.6
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 128 bits (309), Expect = 6e-31
Identities = 64/97 (65%), Positives = 71/97 (73%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 211 XXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYK 321
Y+TP LAVL++YK
Sbjct: 71 LRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYK 107
Score = 51.6 bits (118), Expect = 8e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 314 FTRXDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 445
+ + +++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 128 bits (309), Expect = 6e-31
Identities = 64/97 (65%), Positives = 71/97 (73%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 211 XXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYK 321
Y+TP LAVL++YK
Sbjct: 71 LRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYK 107
Score = 51.6 bits (118), Expect = 8e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 314 FTRXDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 445
+ + +++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 105 YYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 87 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 163 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 239 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 116 bits (280), Expect = 2e-27
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+TITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 315 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 71.3 bits (167), Expect = 9e-14
Identities = 27/60 (45%), Positives = 45/60 (75%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
+ I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 11 KEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 43 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 201
LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 39.5 bits (88), Expect = 3e-04
Identities = 16/49 (32%), Positives = 31/49 (63%)
Frame = +1
Query: 46 EVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 192
+V I +K KIQ ++ +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 17 DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 49 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 210
V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 523 NPSYTAVASVSYRLEGTYLFVVVFEDHRAVTLPAV 419
NP+YT SY L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 190 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 104
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/50 (24%), Positives = 20/50 (40%)
Frame = +2
Query: 314 FTRXDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 463
+ R +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 31 RTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 207
+ + ++ P DT+ + K + + G P + L +D TL+DY I +L +
Sbjct: 12 KKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 112 PNQQRLIFAGKQLEDGRTLSDYNI 183
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,488
Number of Sequences: 5004
Number of extensions: 39835
Number of successful extensions: 109
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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