Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F22
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    83   2e-17
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    79   3e-16
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.64 
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.6  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 42/71 (59%), Positives = 48/71 (67%)
 Frame = +2

Query: 128 YQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVR 307
           Y ++KK   IPRCG     L+GI   RP E +RL + KKTV+R YGG L    VK RIVR
Sbjct: 32  YLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRIVR 91

Query: 308 AFLIEEQKIVK 340
           AFLIEEQKIVK
Sbjct: 92  AFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPG 114
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPG 27


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 40/71 (56%), Positives = 47/71 (66%)
 Frame = +2

Query: 128 YQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVR 307
           Y ++KK   IPRCG     L+GI   RP E +RL + +K V+R YGG L    VK RIVR
Sbjct: 32  YLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRIVR 91

Query: 308 AFLIEEQKIVK 340
           AFLIEEQKIVK
Sbjct: 92  AFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPG 114
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPG 27


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 307 SDNALLDTFMAEDTTINTFH 248
           SDNA +DT ++ED TIN  H
Sbjct: 83  SDNAAIDTDISEDETINQRH 102


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 408 LSXKIHFVAFFADLVLACCALRTFTIFCSS 319
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,865
Number of Sequences: 5004
Number of extensions: 32373
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)