Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F22
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 86 2e-17
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 86 2e-17
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 85 4e-17
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088... 29 2.0
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 28 3.4
01_05_0589 + 23459847-23460344,23460493-23461296 27 6.0
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 7.9
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 85.8 bits (203), Expect = 2e-17
Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +2
Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCV 289
GRLVYQY KK P+C K++GI RPAE RSRL ++TV R YGGVL V
Sbjct: 28 GRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAV 87
Query: 290 KQRIVRAFLIEEQKIVK 340
++RI+RAFL+EEQKIVK
Sbjct: 88 RERIIRAFLVEEQKIVK 104
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 162
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 85.8 bits (203), Expect = 2e-17
Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +2
Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCV 289
GRLVYQY KK P+C K++GI RPAE RSRL ++TV R YGGVL V
Sbjct: 28 GRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAV 87
Query: 290 KQRIVRAFLIEEQKIVK 340
++RI+RAFL+EEQKIVK
Sbjct: 88 RERIIRAFLVEEQKIVK 104
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 162
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPK 43
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 84.6 bits (200), Expect = 4e-17
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = +2
Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKCV 289
G+LVYQY KK P+C K++GI RPAE RSRL ++TV R YGGVL V
Sbjct: 28 GKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAV 87
Query: 290 KQRIVRAFLIEEQKIVK 340
++RI+RAFL+EEQKIVK
Sbjct: 88 RERIIRAFLVEEQKIVK 104
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 162
MVQRLT+R+R SY TKSNQ R+V+TPG L KK PK
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPK 43
>08_02_1022 +
23707993-23708528,23708620-23708706,23708807-23708863,
23708955-23709261,23709545-23709631,23709720-23709767
Length = 373
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 223 GTFSRSSWLDTTEFALALTTPWDLLGLFYILINQAASPVSL 101
G + + SWL FA+ALT + L+ +LI Q A SL
Sbjct: 22 GVYLQRSWLVLLMFAVALTPTYVLMEDLLLLIGQPADLASL 62
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 32 KWC-SGLHSGDDCRTTQNQIKEE**GHRAGRLVYQYVKKPKKI 157
KW SG HS +DC+ + QI+ G++ + KKP K+
Sbjct: 577 KWYNSGAHSTNDCKVFRQQIQA---AIEGGKIKFDDSKKPMKV 616
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 228 RRERSAGLAGWIPRSLLLH*PHLGIFL 148
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 231 QRRERSAGLAGWIPRSLLLH*PHLGIFL 148
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,605,606
Number of Sequences: 37544
Number of extensions: 225521
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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