Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F22
         (480 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089676-1|AAL90414.1|  168|Drosophila melanogaster RH48056p pro...   126   2e-29
AE014297-925|AAN13422.1|  168|Drosophila melanogaster CG9354-PB,...   126   2e-29
AE014297-924|AAF54369.1|  168|Drosophila melanogaster CG9354-PA,...   126   2e-29
AE014297-3917|AAN14070.1|  162|Drosophila melanogaster CG6090-PB...   125   3e-29
AE014297-3916|AAF56564.2|  162|Drosophila melanogaster CG6090-PA...   125   3e-29
AY071577-1|AAL49199.1|  162|Drosophila melanogaster RE63456p pro...   122   3e-28
AE014134-1389|AAF52597.3| 2898|Drosophila melanogaster CG7466-PA...    31   0.82 
AE014297-3919|AAF56566.1|  201|Drosophila melanogaster CG14551-P...    28   7.6  

>AY089676-1|AAL90414.1|  168|Drosophila melanogaster RH48056p
           protein.
          Length = 168

 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL+GI P+RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQ 183
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK 50


>AE014297-925|AAN13422.1|  168|Drosophila melanogaster CG9354-PB,
           isoform B protein.
          Length = 168

 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL+GI P+RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQ 183
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK 50


>AE014297-924|AAF54369.1|  168|Drosophila melanogaster CG9354-PA,
           isoform A protein.
          Length = 168

 Score =  126 bits (304), Expect = 2e-29
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL+GI P+RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQ 183
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK 50


>AE014297-3917|AAN14070.1|  162|Drosophila melanogaster CG6090-PB,
           isoform B protein.
          Length = 162

 Score =  125 bits (302), Expect = 3e-29
 Identities = 56/77 (72%), Positives = 63/77 (81%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL GI P+RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQ 183
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK 50


>AE014297-3916|AAF56564.2|  162|Drosophila melanogaster CG6090-PA,
           isoform A protein.
          Length = 162

 Score =  125 bits (302), Expect = 3e-29
 Identities = 56/77 (72%), Positives = 63/77 (81%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL GI P+RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLHGITPSRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQ 183
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEK 50


>AY071577-1|AAL49199.1|  162|Drosophila melanogaster RE63456p
           protein.
          Length = 162

 Score =  122 bits (294), Expect = 3e-28
 Identities = 55/77 (71%), Positives = 62/77 (80%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLVYQYVKK   +PRCGQCK KL GI  +RP+ER R+  R KTV R YGGVLCH C+++
Sbjct: 28  GRLVYQYVKKNPTVPRCGQCKEKLHGITASRPSERPRMSKRLKTVSRTYGGVLCHSCLRE 87

Query: 296 RIVRAFLIEEQKIVKVL 346
           RIVRAFLIEEQKIVK L
Sbjct: 88  RIVRAFLIEEQKIVKAL 104



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 31/57 (54%), Positives = 36/57 (63%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPKVWSVQEQTPWYPAS 204
           MVQRLT RRRLSYNT+SN+RRIVRTPG  L     KK    P+    +E+     AS
Sbjct: 1   MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITAS 57


>AE014134-1389|AAF52597.3| 2898|Drosophila melanogaster CG7466-PA
           protein.
          Length = 2898

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 197 GYHG-VCSCTDHTLGSSWAFLHTD 129
           GY G +C  +DH  GSSW +L TD
Sbjct: 204 GYSGRLCDLSDHPAGSSWRWLATD 227


>AE014297-3919|AAF56566.1|  201|Drosophila melanogaster CG14551-PA
           protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLC-YRKKTVKRVYGGVLCHKC 286
           G L+Y  + KP  + RC  C       + A P +R+     RK   ++    V  H+C
Sbjct: 119 GPLIYGMLPKPAVVGRCPTCSGNPERTEVAIPEQRTPWAPERKSWNRKTQEQVKPHRC 176


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,892
Number of Sequences: 53049
Number of extensions: 381600
Number of successful extensions: 1304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)