Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F22
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    82   2e-16
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81517-6|CAB04213.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    27   9.3  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   9.3  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      27   9.3  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      27   9.3  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 41/74 (55%), Positives = 48/74 (64%)
 Frame = +2

Query: 116 GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVKQ 295
           GRLV QY+KK  +IP+C     KL GI PARP     L   ++TV R YGG L    VK+
Sbjct: 28  GRLVVQYIKKRGQIPKCRDTGVKLHGITPARPIALRLLKRNERTVTRAYGGCLSPNAVKE 87

Query: 296 RIVRAFLIEEQKIV 337
           RI RAFL+EEQKIV
Sbjct: 88  RITRAFLVEEQKIV 101



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCKKAQEDPK 162
           M  R+T+RRRLSYNT SN++R+V+TPG  L +   KK  + PK
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -3

Query: 313  EGSDNALLDTFMAEDTTIN-TFHCFLTVAK--TGTFSRSSWLDTTEFALALTTPWDLLGL 143
            +GSD    D FM     +N T    + + K    T+  S   +T   + +L   WD  GL
Sbjct: 1002 KGSDR-YRDLFMCITHFVNPTVGFIMGIYKIAASTYENSGLAETMHNSASL---WDFNGL 1057

Query: 142  FYILINQAASPVSLLFFFDLILCCTTV 62
                + + A  ++  F F L+LCC T+
Sbjct: 1058 ----VIELAFIIAAAFLFTLLLCCITM 1080


>Z81517-6|CAB04213.2|  327|Caenorhabditis elegans Hypothetical
           protein F28B1.6 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 208 SSWLDTTEFALALTTPWDLLGLFYILINQAASPVSLLFFFDLIL 77
           SS+    +FA+   + W LLG++ I + + ++   LL FF+L L
Sbjct: 175 SSFASLEQFAVWRES-WALLGVYIIALCEMSTLAGLLVFFNLDL 217


>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +1

Query: 73  NTKSNQRRIVRTPGWPLG--LSVCKKAQEDPKVWS--VQEQTPW 192
           NT++ +RR  R P  P G   S    A   P VW   VQ    W
Sbjct: 273 NTRAKERRSNRLPSMPRGSVASAAAAAATSPTVWQTPVQLMAAW 316


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 256 TFHCFLTVAKTGTFSRSSW 200
           TFHC LTV +    +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +1

Query: 73  NTKSNQRRIVRTPGWPLG--LSVCKKAQEDPKVWS--VQEQTPW 192
           NT++ +RR  R P  P G   S    A   P VW   VQ    W
Sbjct: 273 NTRAKERRSNRLPSMPRGSVASAAAAAATSPTVWQTPVQLMAAW 316


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +1

Query: 73  NTKSNQRRIVRTPGWPLG--LSVCKKAQEDPKVWS--VQEQTPW 192
           NT++ +RR  R P  P G   S    A   P VW   VQ    W
Sbjct: 273 NTRAKERRSNRLPSMPRGSVASAAAAAATSPTVWQTPVQLMAAW 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,054,547
Number of Sequences: 27780
Number of extensions: 194342
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)