Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F18
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    67   7e-12
AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    27   9.5  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    27   9.5  

>Z78066-8|CAE48546.1|  204|Caenorhabditis elegans Hypothetical
           protein W06A7.3e protein.
          Length = 204

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 58/103 (56%)
 Frame = +1

Query: 259 FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
           FR++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 58  FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 116

Query: 439 EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
           E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 117 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 159


>Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical
           protein W06A7.3d protein.
          Length = 570

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 58/103 (56%)
 Frame = +1

Query: 259 FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
           FR++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 424 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 482

Query: 439 EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
           E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 483 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 525


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 58/103 (56%)
 Frame = +1

Query: 259  FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
            FR++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 2338 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 2396

Query: 439  EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
            E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 2397 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 2439


>Z78066-5|CAB01523.1|  222|Caenorhabditis elegans Hypothetical
           protein W06A7.3b protein.
          Length = 222

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 58/103 (56%)
 Frame = +1

Query: 259 FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
           FR++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 76  FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 134

Query: 439 EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
           E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 135 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 177


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 58/103 (56%)
 Frame = +1

Query: 259  FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
            FR++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 2519

Query: 439  EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
            E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 2520 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 2562


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 33/103 (32%), Positives = 57/103 (55%)
 Frame = +1

Query: 259  FRLYKNVLQAVQKTNDGHPFKWLLEAEVKRCRXXXXXXXXXXXXXXXXXXXYELRRLFLV 438
            F ++K V   ++KT+  HPF  +L  ++   +                    +L++L  V
Sbjct: 2342 FSVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIAN-KLKKLVFV 2400

Query: 439  EDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 567
            E  ++S+KFG++LW LTY+ + F+G TL ILG + +F++PK Y
Sbjct: 2401 ESPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVY 2443


>AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 561 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQR 454
           +++RE R   ED  R P+E + ++ E+ +QHA  +R
Sbjct: 160 IKRREMRQKMEDSGRLPLERQKYMHESRRQHALKRR 195


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 546 QRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQ 433
           Q+Y     ++ PV+ RP V++  Q H E Q+  ++L Q
Sbjct: 267 QQYKPPPQQQPPVQMRPPVQQPQQNHQEEQQNAELLMQ 304


>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 561 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQ 445
           +R+ +   PT D+E  P+E+RP  R   ++   LQRV +
Sbjct: 540 MRRLDSDRPT-DEEIPPIESRPQTRREIERDRLLQRVRE 577


>Z50872-4|CAA90757.2|  498|Caenorhabditis elegans Hypothetical
           protein C05D12.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 289 VQKTNDGHPFKWLLEAEVKRCR 354
           +  TNDG  F W+ + +V  CR
Sbjct: 192 IHSTNDGQQFPWMSDEQVSFCR 213


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 558 RQREQRYPTEDDER-DPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 418
           R++E++   ED ER    E R H+    Q  A  + + +  H+++  Q
Sbjct: 249 REQEEKQKNEDRERATQKERREHIERHRQAEARAKALEKEKHEQEEKQ 296


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 558 RQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQ 445
           R++   Y  ED++R+ +E+RP  R +        R H+
Sbjct: 242 RRQYPEYEYEDEDREEMESRPRRRHSNNARGRSTRKHR 279


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 558 RQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 418
           +Q++QR+P E  +       P  +       ++Q+ HQ L  +Q  Q
Sbjct: 538 QQQQQRHPNEGQQFQQGPPPPPPQRIQNHQQQMQQYHQQLQVQQQQQ 584


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 558 RQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 418
           +Q++QR+P E  +       P  +       ++Q+ HQ L  +Q  Q
Sbjct: 538 QQQQQRHPNEGQQFQQGPPPPPPQRIQNHQQQMQQYHQQLQVQQQQQ 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,577
Number of Sequences: 27780
Number of extensions: 101496
Number of successful extensions: 548
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)