Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F16
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 161 6e-41
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 47 3e-06
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 38 0.002
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 4.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.0
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 9.2
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.2
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 161 bits (392), Expect = 6e-41
Identities = 80/154 (51%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Frame = +1
Query: 178 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 357
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 358 KTTAKGLFKILEKYRP-XXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 534
K TA +FK+L KYRP +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 535 XXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
A+LV+IA DVDPIELV+FLPALC+KMGVPY
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPY 177
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 499 IRSGTNTVTKLVXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
+R G N TK + ++ +V+A D +PIE++L LP LC VPY
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPY 77
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 499 IRSGTNTVTKLVXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
I G V K V LV++A D+ P++++ +P LC VPY
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 502 RSGTNTVTKLVXXXXAQLVVIAHDVDPIELVLFLPALCRKM 624
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 292 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 393
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 520 LCLCRIGWC 494
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 276 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 365
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 213 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 368
++ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/63 (23%), Positives = 23/63 (36%)
Frame = +3
Query: 153 KG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSD 332
KG Q+ S +E ++L H P P P S + ESAP +
Sbjct: 280 KGAIQDSSIQSYLDEEEKLSRELDHKTKDASSTNDSQTTPLPPPPPVAVNSTNDESAPQN 339
Query: 333 QPI 341
+ +
Sbjct: 340 EEL 342
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 364 TAKGLFKILEKYR 402
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,622
Number of Sequences: 5004
Number of extensions: 42091
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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