Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F16
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 182 2e-46
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 170 6e-43
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 3e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 8e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 33 0.13
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 33 0.13
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 182 bits (443), Expect = 2e-46
Identities = 85/155 (54%), Positives = 105/155 (67%)
Frame = +1
Query: 172 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 351
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 352 LDKTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 531
LD +A+ FK+L+KYRP RPNT+R G NT+T+L
Sbjct: 88 LDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147
Query: 532 VXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
V AQLV+IAHDV+P+E+VL LPALCRK VPY
Sbjct: 148 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPY 182
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 170 bits (414), Expect = 6e-43
Identities = 85/155 (54%), Positives = 105/155 (67%)
Frame = +1
Query: 172 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 351
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 352 LDKTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 531
LD +A+ FK+L+KYRP RPNT+R G NT+T+L
Sbjct: 88 LDSQSARQAFKLLDKYRP--------------------ESTEVTKRPNTVRHGVNTITRL 127
Query: 532 VXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
V AQLV+IAHDV+P+E+VL LPALCRK VPY
Sbjct: 128 VETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPY 162
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (285), Expect = 3e-27
Identities = 51/78 (65%), Positives = 64/78 (82%)
Frame = +1
Query: 172 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 351
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 352 LDKTTAKGLFKILEKYRP 405
LD +A+ FK+L+KYRP
Sbjct: 191 LDSHSARQAFKLLDKYRP 208
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (240), Expect = 8e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = +1
Query: 172 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 351
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 352 LD 357
LD
Sbjct: 191 LD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +1
Query: 499 IRSGTNTVTKLVXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
++ G N TK + ++++V+A D +P+E++L LP LC VPY
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPY 80
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 496 TIRSGTNTVTKLVXXXXAQLVVIAHDVDPIELVLFLPALCRKMGVPY 636
T+R G V K + + ++A +V PI++ +P +C + +PY
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPY 114
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 441 FXQPLFXGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 334
F QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 169 FSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 326 LRSTNLPRHWTRLQLRA 376
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,718
Number of Sequences: 27780
Number of extensions: 245261
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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