Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F15
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   5.0  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   6.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.5  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   6.5  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.7  

>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 188 ELLIYIFNLKKSAAEAH-RLLVEAY---NEAALSERTCREWFQKFK 313
           ELL+Y+ N      +A+ R++V  +   N+  L+ R C+ WF++ K
Sbjct: 273 ELLVYLKNNNIPINDAYLRMMVINFCLANKPTLAVRFCQAWFKQSK 318


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 209 NLKKSAAEAHRLLVEAYNEAALSERTCREWFQKFKNGDFNVXDKDRSGRPKIYED 373
           + + SAAEA +  +EA  + + S+R   E  Q  +   ++  D +R    K+Y D
Sbjct: 63  DFRLSAAEARKRYIEAVEKRSSSQREVNELLQ--RRSSWSTIDLERF--TKLYRD 113


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 557 HWWKHFGLPKDLQLRCY*CLVYKS 486
           H W +F   KDL+ + + C+V  S
Sbjct: 774 HLWTYFPFKKDLKTKSFDCIVIAS 797


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 FYPKMSKFEPNKRHLRELL 196
           F+PK+ K   N  HLR+LL
Sbjct: 8   FFPKLGKVNENIVHLRQLL 26


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 194 LIYIFNLK-KSAAEAHRLLVEAYNEAALSERTCREWFQKFKNGDFNVXDKDRSG 352
           L  +FN   ++ +   RL+  A+  +  S +    WFQ  ++ +F + D D+ G
Sbjct: 306 LSQLFNWSCQNISSYQRLVSFAHLYSYTSVKCLVHWFQIMRSAEFRMYDNDQLG 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,000
Number of Sequences: 5004
Number of extensions: 38880
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)