Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F15
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    93   3e-21
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 92.7 bits (220), Expect = 3e-21
 Identities = 42/114 (36%), Positives = 63/114 (55%)
 Frame = +2

Query: 164 EPNKRHLRELLIYIFNLKKSAAEAHRLLVEAYNEAALSERTCREWFQKFKNGDFNVXDKD 343
           E  K H R +L++ F   K+A++AH+ L   Y + AL ER C+ WF KF++GDF++ D+ 
Sbjct: 2   ENQKEHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEK 61

Query: 344 RSGRPKIYEDAXXXXXXXXDSSQTQKKLALTLEVTQQAVSRRLKSLGMIYKQGT 505
           RSGRP   +D         D   T +++A  L V+   +   LK LG + K  T
Sbjct: 62  RSGRPVEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQKLDT 115


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 571 AGATCIGGSI 542
           AGATC+G SI
Sbjct: 577 AGATCLGSSI 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,930
Number of Sequences: 438
Number of extensions: 2619
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)