Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F14
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   107   1e-24
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    25   7.0  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   9.2  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  107 bits (256), Expect = 1e-24
 Identities = 48/90 (53%), Positives = 71/90 (78%)
 Frame = +1

Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ I R+ REKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 319 ATAYVGIHPSKCVIVKLXMNKDRKAILDRR 408
           A+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 58.0 bits (134), Expect = 8e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +3

Query: 42  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTKIQCKIHAYSQRR 200
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 315 IGLF--SLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 193
           I LF  ++N  N++ K F+   +H AN + F  +  N  +++F
Sbjct: 181 ISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMF 223


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 453 VFTXVFAKCSQSALCSAIEDCFAVFI 376
           +F  VFA CS S+ CS +   F +F+
Sbjct: 140 LFARVFALCSSSSPCS-VAKAFTLFL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,909
Number of Sequences: 5004
Number of extensions: 41484
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)