Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F14
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 4e-38
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 1.8
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 3.1
SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.6
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 154 bits (374), Expect = 4e-38
Identities = 72/100 (72%), Positives = 86/100 (86%)
Frame = +1
Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
P SKELRQK+NV+S+P+RKDDEVQV RGH+K QQVGKV+QVYRKK+V++I RIQREKANG
Sbjct: 33 PLSKELRQKYNVRSIPVRKDDEVQVTRGHFKSQQVGKVIQVYRKKWVIHIDRIQREKANG 92
Query: 319 ATAYVGIHPSKCVIVKLXMNKDRKAILDRRAKGRLAALGK 438
AT VGIHPSK IVKL ++KDRK ILDR+ + +LA GK
Sbjct: 93 ATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 29/34 (85%)
Frame = +3
Query: 42 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 143
MK N +V+SSRRK+RK HFSAPS +RR LMS+PL
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPL 34
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A CSF + SP N + +PC F
Sbjct: 1239 PCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCSF 1298
Query: 191 AK 196
+
Sbjct: 1299 GE 1300
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1281 PCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1340
Query: 191 AK 196
+
Sbjct: 1341 GE 1342
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-ALRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A C F + SP + N + +PC F
Sbjct: 1225 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRF 1284
Query: 191 AK 196
+
Sbjct: 1285 GE 1286
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1309 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1368
Query: 191 AK 196
+
Sbjct: 1369 GE 1370
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1337 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCRF 1396
Query: 191 AK 196
+
Sbjct: 1397 GE 1398
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSP-ALRN*DKNSM*NPCLF 190
PCRFGE N++ F + + A C F + SP N + +PC F
Sbjct: 1365 PCRFGEAPDNKIASPCRFGEAPDNKIASPCRFGEAPDNKIASPCCFGEAPDNKIASPCRF 1424
Query: 191 A 193
+
Sbjct: 1425 S 1425
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 PCRFGEXRQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVLSPA-LRN*DKNSM*NPCLF 190
PC FGE N++ F + + A CSF + SP N + +PC F
Sbjct: 1267 PCSFGEAPDNKIASPCRFGEAPDNKIASPCSFGEAPDNKIASPCRFGEAPDNKIASPCRF 1326
Query: 191 AK 196
+
Sbjct: 1327 GE 1328
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 489 LRGLHGCGSFLGVFTXVFAKCSQS 418
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 406 CDRGLLCGLYSXST*QSHTLKGE-CRHMLLHHWP--FLFESXQCIQQTFYD 263
C G + + ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_27754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 309 LFSLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVFAN 187
L +++ ++YN+L +H+ H N L V T+ N +V A+
Sbjct: 338 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLVAAH 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 309 LFSLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 196
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 182 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 219
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 309 LFSLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 196
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 194 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 231
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 309 LFSLNPXNVYNKLFTIHLHHFANLLAFVVSTYNLNFIV 196
L +++ ++YN+L +H+ H N L V T+ N +V
Sbjct: 206 LVAVHVTHLYNRLVAVHVTHLYNRLVAVHVTHLYNRLV 243
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 315 WCNSICRHSPFKVCDCQVEXE*RPQSNPRSQSKGQTGCTWQRQX*IHRGNCHSHG 479
W N IC ++C C+V E N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 269 KSLLYTLXGFKEKRPMVQQHMSAF 340
KSL+Y FK KRP V + SAF
Sbjct: 195 KSLIYEPSRFKPKRPSVSKLKSAF 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,638
Number of Sequences: 59808
Number of extensions: 339938
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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