Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F14
         (529 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p pro...   178   3e-45
AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA...   178   3e-45
BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p pro...    30   2.2  
AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA...    30   2.2  

>AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p
           protein.
          Length = 149

 Score =  178 bits (434), Expect = 3e-45
 Identities = 81/105 (77%), Positives = 93/105 (88%)
 Frame = +1

Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
           P SKELRQK+NV+SMPIR+DDEVQV+RGH+KG QVGKV+Q YRKKFVVY+ +IQRE ANG
Sbjct: 33  PLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANG 92

Query: 319 ATAYVGIHPSKCVIVKLXMNKDRKAILDRRAKGRLAALGKDXGKY 453
              YVGIHPSK +IVKL ++KDRKAIL+RR KGRLAALGKD GKY
Sbjct: 93  TNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKY 137



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 42  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 143
           MK N  V+SSRRKNRKRHF APSHIRR LMS+PL
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPL 34


>AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA
           protein.
          Length = 149

 Score =  178 bits (434), Expect = 3e-45
 Identities = 81/105 (77%), Positives = 93/105 (88%)
 Frame = +1

Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
           P SKELRQK+NV+SMPIR+DDEVQV+RGH+KG QVGKV+Q YRKKFVVY+ +IQRE ANG
Sbjct: 33  PLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQVGKVVQAYRKKFVVYVEKIQRENANG 92

Query: 319 ATAYVGIHPSKCVIVKLXMNKDRKAILDRRAKGRLAALGKDXGKY 453
              YVGIHPSK +IVKL ++KDRKAIL+RR KGRLAALGKD GKY
Sbjct: 93  TNVYVGIHPSKVLIVKLKLDKDRKAILERRGKGRLAALGKDKGKY 137



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 42  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 143
           MK N  V+SSRRKNRKRHF APSHIRR LMS+PL
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPL 34


>BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p
           protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 196 DDEVQVVRGHYKGQQ-VGKVMQVYRKKFVVY 285
           D  V + RGHY+G   +GK+  V+R  F+ +
Sbjct: 98  DQPVYIGRGHYEGHLIIGKISSVHRALFIAF 128


>AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA,
           isoform A protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 196 DDEVQVVRGHYKGQQ-VGKVMQVYRKKFVVY 285
           D  V + RGHY+G   +GK+  V+R  F+ +
Sbjct: 98  DQPVYIGRGHYEGHLIIGKISSVHRALFIAF 128


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,515,489
Number of Sequences: 53049
Number of extensions: 482884
Number of successful extensions: 1250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)