Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F14
(529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 121 3e-28
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 94 6e-20
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 94 6e-20
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 2.7
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 28 3.6
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81075-7|CAI79229.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81075-3|CAI79228.1| 192|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81075-2|CAB03048.1| 368|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z79754-12|CAD57695.1| 440|Caenorhabditis elegans Hypothetical p... 27 8.3
Z79754-11|CAB02100.1| 478|Caenorhabditis elegans Hypothetical p... 27 8.3
AL032645-3|CAI79264.1| 342|Caenorhabditis elegans Hypothetical ... 27 8.3
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 121 bits (292), Expect = 3e-28
Identities = 55/105 (52%), Positives = 79/105 (75%)
Frame = +1
Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
P +KELR K ++++PIR DDEV V+RG +KG G+V++ YRKKFV++I +I REKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 319 ATAYVGIHPSKCVIVKLXMNKDRKAILDRRAKGRLAALGKDXGKY 453
+T ++GIHPSK I KL ++KDR+A+++R+A GR G GK+
Sbjct: 92 STVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 42 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 164
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 93.9 bits (223), Expect = 6e-20
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +1
Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
P +KELR K ++++PIR DDEV V+RG +KG G+V++ YRKKFV++I +I REKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 319 ATAYVGIHPSK 351
+T ++GIHPSK
Sbjct: 92 STVHIGIHPSK 102
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 42 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 164
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 93.9 bits (223), Expect = 6e-20
Identities = 41/71 (57%), Positives = 57/71 (80%)
Frame = +1
Query: 139 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIXRIQREKANG 318
P +KELR K ++++PIR DDEV V+RG +KG G+V++ YRKKFV++I +I REKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 319 ATAYVGIHPSK 351
+T ++GIHPSK
Sbjct: 92 STVHIGIHPSK 102
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 42 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 164
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +1
Query: 121 EC*CPLPCSKE----LRQKFNVKSMPI--RKDDEVQVVRGHYKGQ 237
+C CPLPCS + K N ++PI K +V + HY Q
Sbjct: 778 DCVCPLPCSNQEYSVTWSKANFVNLPIICGKSSDVSTCKAHYIDQ 822
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 523 FKNFIYLKNYLFKRPPWLWQFPRCI 449
F NF++LKN+L + +F +CI
Sbjct: 79 FSNFLFLKNFLIPKTSRFCRFKKCI 103
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +1
Query: 124 C*CPLPCSKE----LRQKFNVKSMPI--RKDDEVQVVRGHYKGQ 237
C CPLPCS + K N ++PI K +V + YK Q
Sbjct: 799 CVCPLPCSNQEYSVTWSKANFVNLPITCEKSSDVATCQKQYKDQ 842
>Z81075-7|CAI79229.1| 342|Caenorhabditis elegans Hypothetical
protein F35C12.3c protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 313 WPFLFESXQCIQQTFYDTPASLC 245
W +F +CI TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239
>Z81075-3|CAI79228.1| 192|Caenorhabditis elegans Hypothetical
protein F35C12.3b protein.
Length = 192
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 313 WPFLFESXQCIQQTFYDTPASLC 245
W +F +CI TF + P SLC
Sbjct: 67 WRCMFAQNKCIGTTFQNIPISLC 89
>Z81075-2|CAB03048.1| 368|Caenorhabditis elegans Hypothetical
protein F35C12.3a protein.
Length = 368
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 313 WPFLFESXQCIQQTFYDTPASLC 245
W +F +CI TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265
>Z79754-12|CAD57695.1| 440|Caenorhabditis elegans Hypothetical
protein F25H2.12b protein.
Length = 440
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 510 FILKTICLRGLHGCGSFLGVFTXVFAKCSQSALCSAIEDCF 388
F + + L GLH CG F VF K +S C+
Sbjct: 198 FAVNSAILVGLHCCGDFSSTILKVFQKSEKSKALVLFGCCY 238
>Z79754-11|CAB02100.1| 478|Caenorhabditis elegans Hypothetical
protein F25H2.12a protein.
Length = 478
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -2
Query: 510 FILKTICLRGLHGCGSFLGVFTXVFAKCSQSALCSAIEDCF 388
F + + L GLH CG F VF K +S C+
Sbjct: 236 FAVNSAILVGLHCCGDFSSTILKVFQKSEKSKALVLFGCCY 276
>AL032645-3|CAI79264.1| 342|Caenorhabditis elegans Hypothetical
protein F35C12.3c protein.
Length = 342
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 313 WPFLFESXQCIQQTFYDTPASLC 245
W +F +CI TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,563,289
Number of Sequences: 27780
Number of extensions: 246874
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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