Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F09
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   257   8e-70
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   257   8e-70
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.1  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.8  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   6.4  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  257 bits (630), Expect = 8e-70
 Identities = 118/170 (69%), Positives = 138/170 (81%)
 Frame = +2

Query: 86  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 265
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 266 EKIAVHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 445
           EKIA H TVRG KA  ILERGLKV EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 446 YGLDFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIIL 595
           YG+DFYVV+ RPG  V     + G+VG+ H++  ED + WF+ KYD ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  257 bits (630), Expect = 8e-70
 Identities = 118/170 (69%), Positives = 138/170 (81%)
 Frame = +2

Query: 86  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 265
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 266 EKIAVHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 445
           EKIA H TVRG KA  ILERGLKV EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 446 YGLDFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIIL 595
           YG+DFYVV+ RPG  V     + G+VG+ H++  ED + WF+ KYD ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 257 GYQKTALYT*PWKIQAVVL*VAPTPWRHESA 165
           G     +Y   W I A +L V P PWR+ S+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 119 YEDSALHF*NYPSEPXSPFYLSSS 48
           YE+ + +  +Y S+P SP Y+SSS
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 116 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 259
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -3

Query: 597 LSMIPSYXC-WNHFIASSFVRRW 532
           LS I S+   W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,086
Number of Sequences: 5004
Number of extensions: 47552
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)