Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F09
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 256 7e-69
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 256 7e-69
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 195 3e-50
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 172 2e-43
02_02_0196 + 7685933-7685961,7686086-7686284 89 3e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 47 1e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 32 0.40
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 31 0.70
01_01_0582 - 4317216-4317731 28 5.0
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 27 8.7
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 256 bits (628), Expect = 7e-69
Identities = 123/167 (73%), Positives = 136/167 (81%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 277
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 278 VHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 457
+ TVRG KA +LE GLKV EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 458 FYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIILN 598
FYVVL R G+ V R +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 256 bits (628), Expect = 7e-69
Identities = 123/167 (73%), Positives = 136/167 (81%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 277
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 278 VHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 457
+ TVRG KA +LE GLKV EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 458 FYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIILN 598
FYVVL R G+ V R +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 195 bits (475), Expect = 3e-50
Identities = 102/169 (60%), Positives = 119/169 (70%), Gaps = 2/169 (1%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 277
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 278 VHCTVRGAKAXXILERGLKVXEYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYG 451
+ TVRG KA +LE GLK+ DN S T + + +YDPS GIYG
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125
Query: 452 LDFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIILN 598
+DFYVVL R G+ V R +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 174
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 172 bits (418), Expect = 2e-43
Identities = 88/129 (68%), Positives = 95/129 (73%)
Frame = +2
Query: 38 HRLRLXXXXXXXXXXXDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPV 217
H L L N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PV
Sbjct: 15 HLLNLTPLFRVRVASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPV 74
Query: 218 FSKARYTVRSFGIRRNEKIAVHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGI 397
FSKARYTVRSFGIRRNEKIA + TVRG KA +LE GLKV EYEL R NFS TG FGFGI
Sbjct: 75 FSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGI 134
Query: 398 QEHIDLGIK 424
QEHIDLGIK
Sbjct: 135 QEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +2
Query: 425 YDPSIGIYGLDFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIILN 598
YDPS GIYG+DFYVVL R G+ V R +VG HR+TKEDAMKWFQ KY+G+ILN
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 68
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 47.2 bits (107), Expect = 1e-05
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 268
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 269 KIAVHCTVRGAKAXXILER----GL-KVXEY-ELRRDNFSATGNFGFGIQEH-IDLGIKY 427
I + T+RG L+R GL + ++ + ++F GNF G+++ + I Y
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPY 217
Query: 428 DPSIGIYGLDFYVV 469
+ G+D +V
Sbjct: 218 EVGGKKNGMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 266 EKIAVHCTVRGAKAXXILERGLK 334
EKIA + TVRG KA +LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 266 EKIAVHCTVRGAKAXXILERGLK 334
EKIA + TVRG KA +LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 261 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 136
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Frame = -2
Query: 400 LNTEAKITRGGEVVTPQFIFXDFQTPLKDXXCFSSSDCTMDSNLFITTDTK-----RPHC 236
+ T + I + G + + +F FQ L D S D I TK +PH
Sbjct: 337 IKTSSPIEKQGADLYTRSMFLKFQQELVDASVSSLEVMKEDGKSRIYKVTKSAGSEKPHM 396
Query: 235 IP--SLGKYRLLSCELLQHLG 179
+ S G SC++ +HLG
Sbjct: 397 VEFNSFGSSATCSCQMFEHLG 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,104
Number of Sequences: 37544
Number of extensions: 315665
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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