Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F09
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 277 6e-75
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 276 1e-74
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 3.3
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 3.3
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 5.9
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 277 bits (678), Expect = 6e-75
Identities = 129/168 (76%), Positives = 145/168 (86%)
Frame = +2
Query: 92 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 271
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 272 IAVHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 451
IAVHCTVRG KA ILE+GLKV EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134
Query: 452 LDFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIIL 595
+DFYVVL R G + R G+VG HR+ +E+++KWFQ KYDGIIL
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 276 bits (676), Expect = 1e-74
Identities = 129/167 (77%), Positives = 142/167 (85%)
Frame = +2
Query: 95 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 274
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 275 AVHCTVRGAKAXXILERGLKVXEYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 454
AVHCTVRG KA ILE+GLKV EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76 AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135
Query: 455 DFYVVLGRPGFNVXHXXRKTGKVGFPHRLTKEDAMKWFQXKYDGIIL 595
DFYVVL R G V R G++G HR+ KE+ +KWFQ KYDGIIL
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +3
Query: 354 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXXVRQEKWDFP 533
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 534 TASQRKM 554
T S R M
Sbjct: 1006 TPSSRNM 1012
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +3
Query: 354 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXXVRQEKWDFP 533
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 534 TASQRKM 554
T S R M
Sbjct: 1006 TPSSRNM 1012
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +3
Query: 354 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTXXVRQEKWDFP 533
GV +S PR I ASV + + SST T ++ + H QE P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 534 TASQRKM 554
T S R M
Sbjct: 1006 TPSSRNM 1012
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 304 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 203
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 295 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 182
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,015
Number of Sequences: 27780
Number of extensions: 266585
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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