Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F06
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)                 28   5.8  
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 28   7.6  
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            28   7.6  

>SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)
          Length = 508

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 157 IICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
           ++C+ +I F   PLCL +  K    I V  C + C
Sbjct: 146 VLCIGVISFTVAPLCLEISLK-AYAILVCTCTSIC 179


>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 246 HVHVYIYARFIKHTQTQRC 190
           HVH + YA    HTQT++C
Sbjct: 293 HVHAHKYANAHTHTQTRKC 311


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 246 HVHVYIYARFIKHTQTQRC 190
           HVH + YA    HTQT++C
Sbjct: 68  HVHAHKYANAHTHTQTRKC 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,801
Number of Sequences: 59808
Number of extensions: 350292
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)