Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F06
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens ... 36 0.13
AK022609-1|BAB14128.1| 307|Homo sapiens protein ( Homo sapiens ... 33 0.67
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 32 2.1
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 31 2.7
AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens ... 31 3.6
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 30 6.3
AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens ... 30 6.3
>AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ38312 fis, clone FCBBF3021506. ).
Length = 134
Score = 35.9 bits (79), Expect = 0.13
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 157 IICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
+IC+ + VF +C VF CI + +YVCV C
Sbjct: 41 VICVCVCVFVCAHMCSCVFVYVCICVCLYVCVFVC 75
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 160 ICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
+C + V+ +CL V C+ +YVY+CV C
Sbjct: 54 MCSCVFVYVCICVCLYVCVFVCVCMYVYLCVFVC 87
>AK022609-1|BAB14128.1| 307|Homo sapiens protein ( Homo sapiens
cDNA FLJ12547 fis, clone NT2RM4000634. ).
Length = 307
Score = 33.5 bits (73), Expect = 0.67
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
HLCVCVCL A++ C CV
Sbjct: 126 HLCVCVCLCVGAHLCVCLCV 145
Score = 31.9 bits (69), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
H+CVCVCL +I C CV
Sbjct: 200 HICVCVCLCVWVHICVCACV 219
Score = 30.3 bits (65), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTC 247
H+CVCVCL +I C C
Sbjct: 238 HICVCVCLCVWVHICVCVC 256
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 160 ICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
+CL + V LCL VF C+ ++V VCV+ C
Sbjct: 149 VCLCVCVCLCVCLCLCVF--LCVCVFVSVCVSVC 180
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 31.5 bits (68), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 160 ICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
+ L + V+ + +CL V+ +Y+ VYVC+ C
Sbjct: 93 VFLCVCVYVSVSVCLCVYLHISVYLCVYVCICVC 126
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 160 ICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
+C+ + V +C+ VF CI + V VCV+ C
Sbjct: 31 VCICVSVCVCICVCVSVFVCVCICVCVCVCVSMC 64
>AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ46559 fis, clone THYMU3040126. ).
Length = 303
Score = 31.1 bits (67), Expect = 3.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
++ +CVC+ R Y YTC CV
Sbjct: 92 YIHMCVCVYTRIYTYTCVCV 111
Score = 30.7 bits (66), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
++ +CVC+ R Y YTC CV
Sbjct: 168 YIHMCVCVYTRIYTYTCMCV 187
Score = 30.3 bits (65), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
+ C+CVC+ YI+ C CV
Sbjct: 80 YTCICVCVHTHIYIHMCVCV 99
Score = 30.3 bits (65), Expect = 6.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
+ C+CVC+ R Y YT CV
Sbjct: 222 YTCMCVCVYTRIYTYTYVCV 241
Score = 29.9 bits (64), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 191 HLCVCVCLIKRAYIYTCTCV 250
+ C CVC+ + YTC CV
Sbjct: 66 YACTCVCVCVHTHTYTCICV 85
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 30.3 bits (65), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 273 YSHITKCHTHVHVYIYARFIKHTQT 199
++HI HTH+H+Y+Y HT T
Sbjct: 344 WTHI-HTHTHIHIYVYTHTHMHTPT 367
>AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ44225 fis, clone THYMU3006168. ).
Length = 262
Score = 30.3 bits (65), Expect = 6.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 160 ICLVIIVFCATPLCLRVFNKTCIYIYVYVCVTFC 261
IC+ I + +C + TC+YI++Y+ + C
Sbjct: 163 ICIFIYTYVCMCVCSCIHVYTCVYIHIYIGMHIC 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,737,798
Number of Sequences: 237096
Number of extensions: 1431016
Number of successful extensions: 2410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2283
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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