Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F06
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    32   0.78 
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    32   0.78 
AF114152-1|AAD12541.1| 2098|Drosophila melanogaster rough deal p...    29   7.3  
AE014297-4759|AAF57162.2| 2089|Drosophila melanogaster CG1569-PA...    29   7.3  

>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 CLVIIVFCATPLCLRV---FNKTCIYIYVYVCVTFC 261
           C V +  C +P+ + +      T IYIY+Y+C  +C
Sbjct: 92  CCVALQCCVSPMSIAISLIVIATTIYIYIYICYRYC 127


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 CLVIIVFCATPLCLRV---FNKTCIYIYVYVCVTFC 261
           C V +  C +P+ + +      T IYIY+Y+C  +C
Sbjct: 92  CCVALQCCVSPMSIAISLIVIATTIYIYIYICYRYC 127


>AF114152-1|AAD12541.1| 2098|Drosophila melanogaster rough deal
            protein protein.
          Length = 2098

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -3

Query: 267  HITKCHTHVHVYIYARFIKHTQTQRCRTENDYH*TNYFVTK*LKFLSKNLHNKNNMAYVL 88
            H+TK   H   Y+ ++++   Q Q CRT+   +    F+T  L+ + +N     ++ ++ 
Sbjct: 1244 HLTKVKEHDAWYVMSQYLLDFQKQNCRTKRIIN--EGFITLQLRRIFRNAMGSKDVNFIE 1301

Query: 87   L 85
            L
Sbjct: 1302 L 1302


>AE014297-4759|AAF57162.2| 2089|Drosophila melanogaster CG1569-PA
            protein.
          Length = 2089

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = -3

Query: 267  HITKCHTHVHVYIYARFIKHTQTQRCRTENDYH*TNYFVTK*LKFLSKNLHNKNNMAYVL 88
            H+TK   H   Y+ ++++   Q Q CRT+   +    F+T  L+ + +N     ++ ++ 
Sbjct: 1244 HLTKVKEHDAWYVMSQYLLDFQKQNCRTKRIIN--EGFITLQLRRIFRNAMGSKDVNFIE 1301

Query: 87   L 85
            L
Sbjct: 1302 L 1302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,760,571
Number of Sequences: 53049
Number of extensions: 476376
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)