Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F05
(470 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 173 1e-42
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 121 7e-27
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 108 7e-23
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 107 2e-22
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 100 3e-20
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 99 4e-20
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 99 6e-20
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 90 2e-17
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 83 4e-15
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 81 2e-14
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 75 8e-13
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 70 3e-11
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 69 4e-11
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 69 5e-11
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 65 6e-10
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 64 1e-09
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 64 2e-09
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 61 1e-08
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 61 1e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 60 2e-08
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 59 6e-08
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 59 6e-08
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 56 4e-07
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 55 9e-07
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 54 1e-06
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 54 2e-06
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 53 4e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 52 8e-06
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 49 6e-05
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 47 2e-04
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 43 0.003
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 41 0.012
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 40 0.028
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 36 0.59
UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3; ... 33 3.2
UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia... 32 5.5
UniRef50_UPI0000EBDEE2 Cluster: PREDICTED: hypothetical protein;... 32 7.3
UniRef50_A3WCD2 Cluster: Putative uncharacterized protein; n=1; ... 32 7.3
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 32 7.3
UniRef50_UPI0000E1FD11 Cluster: PREDICTED: hypothetical protein;... 31 9.7
UniRef50_UPI0000D9D69E Cluster: PREDICTED: similar to beta1,4-N-... 31 9.7
UniRef50_Q8YEE0 Cluster: OLIGOPEPTIDE TRANSPORT ATP-BINDING PROT... 31 9.7
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 173 bits (422), Expect = 1e-42
Identities = 81/101 (80%), Positives = 86/101 (85%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
FIMESGA+GCEVVVSGKLRGQRAKSMKFV GLMIHSGDP N YV+TA RHVLL QGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGI 184
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 343
KVKIMLPWD GK GPKKP PDH+ + EPKDE +P P SE
Sbjct: 185 KVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 121 bits (292), Expect = 7e-27
Identities = 55/98 (56%), Positives = 73/98 (74%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
+IMESGA+G EVVVSGKLRGQRAK+MKF G MI SG+P DY+ + TRH LL QG +G+
Sbjct: 40 YIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRHALLRQGTIGM 99
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 334
+VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 100 RVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 108 bits (259), Expect = 7e-23
Identities = 47/85 (55%), Positives = 63/85 (74%)
Frame = +2
Query: 59 ARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIKVKIML 238
A+GC+++VSGKL+GQRAKS+KF G++IHSGD DY+NT V QGV+GI+V+IML
Sbjct: 142 AQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIML 201
Query: 239 PWDQQGKNGPKKPQPDHILVTEPKD 313
P+D +G GP P PD I + EP +
Sbjct: 202 PYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 107 bits (256), Expect = 2e-22
Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV QG++G+K
Sbjct: 139 VIQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVK 198
Query: 224 VKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 310
VKIMLP++ K G K P PD++++ PK
Sbjct: 199 VKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 99.5 bits (237), Expect = 3e-20
Identities = 53/104 (50%), Positives = 67/104 (64%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
F M +GA+G EVV+SGKLR RAKS K+ G MIHSG P D+++ A RHVL+ QGVLGI
Sbjct: 126 FAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGI 185
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 352
KVKIM + GP + PD + + E KDE + P V+S
Sbjct: 186 KVKIMKD-PAANRFGP-RALPDAVKIAEAKDEDEVI-PAPTVKS 226
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 99.1 bits (236), Expect = 4e-20
Identities = 46/91 (50%), Positives = 60/91 (65%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
F+M++GARGCEV +SGKLRG RA + K+ G M+ SGD +V A H+ + Q +GI
Sbjct: 126 FVMDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGI 185
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 313
+V IML D G +GPK+ QPD I V E KD
Sbjct: 186 RVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 98.7 bits (235), Expect = 6e-20
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = +2
Query: 101 QRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIKVKIMLPWDQQGKNGPKKPQ 280
QRAKSMKF G M+ SG P +Y+++A RHVLL QGVLGIKVKIML WD GK GPK P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 281 PDHILVTEPK 310
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 90.2 bits (214), Expect = 2e-17
Identities = 48/96 (50%), Positives = 59/96 (61%)
Frame = +2
Query: 23 AMVFSAFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLX 202
AM ++MESGA+GCEV + GK++GQRAKSM F G MI SG +V+TATRH L
Sbjct: 170 AMGIIRYVMESGAKGCEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLR 229
Query: 203 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 310
G +G+ VKIM P Q + PD I V EPK
Sbjct: 230 AGTIGVNVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 82.6 bits (195), Expect = 4e-15
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+ ESGA+G E +VSGKL+GQRAKS KFV MIHS D N YV+T+ HVLL QGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 224 VKIMLPWDQ 250
+ P Q
Sbjct: 140 CRSCFPGTQ 148
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 80.6 bits (190), Expect = 2e-14
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = +2
Query: 92 LRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIKVKIMLPWDQQGKNGPK 271
L QRAKSMKF G +I SG P DY++ A RHV L QGVLGIKVKIM WD +GK
Sbjct: 116 LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGIKVKIMFNWDPKGKQSLT 174
Query: 272 KPQPDHILVTEP 307
P PD + + P
Sbjct: 175 TPLPDLVTIQTP 186
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 74.9 bits (176), Expect = 8e-13
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +2
Query: 47 MESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIKV 226
M +GA GCEV+V+GKLR QRA++ KF G +I +G P ++ ATRH+ + QGV+G+KV
Sbjct: 133 MRAGAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKV 192
Query: 227 KIMLP 241
+I P
Sbjct: 193 RIYNP 197
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 69.7 bits (163), Expect = 3e-11
Identities = 35/73 (47%), Positives = 48/73 (65%)
Frame = +2
Query: 23 AMVFSAFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLX 202
A+V IM +GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL
Sbjct: 114 ALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLK 173
Query: 203 QGVLGIKVKIMLP 241
G+ G+KV+IM P
Sbjct: 174 LGMYGVKVRIMKP 186
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 69.3 bits (162), Expect = 4e-11
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IMESGA GCEV+V+GKL G R+++ KF G + H G+P V + G +G++
Sbjct: 120 IMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQ 179
Query: 224 VKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV-PLEP 334
VKI+ P + P +L EPK P P+EP
Sbjct: 180 VKIVPP-------DARLPDAFDVLEPEPKKAPAEPIEP 210
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 68.9 bits (161), Expect = 5e-11
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IME+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V + GVLG+
Sbjct: 119 IMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVS 178
Query: 224 VKIMLP 241
V+I+ P
Sbjct: 179 VRIIPP 184
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 65.3 bits (152), Expect = 6e-10
Identities = 29/66 (43%), Positives = 44/66 (66%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+M SGA+G ++VSGKL G+R+++ KF+ G M H G+P VN + + L G++G+
Sbjct: 119 VMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVT 178
Query: 224 VKIMLP 241
VKIM P
Sbjct: 179 VKIMRP 184
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 64.5 bits (150), Expect = 1e-09
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM +GARG E+ +SGKL G+RAKS++F G + G+P V+ LL GV+G+K
Sbjct: 120 IMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVK 179
Query: 224 VKIMLP 241
V IM P
Sbjct: 180 VAIMPP 185
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 63.7 bits (148), Expect = 2e-09
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+M +GA GCEVV+SGKL G R++ KFV G + HSG+P + V+ + G LG K
Sbjct: 120 VMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCK 179
Query: 224 VKIMLP 241
V+I+ P
Sbjct: 180 VRIIQP 185
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 61.3 bits (142), Expect = 1e-08
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = +2
Query: 38 AFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLG 217
+F+MESG +GCEV+ +I SG P DY+N+ RHVLL QGVL
Sbjct: 178 SFVMESGTKGCEVI----------------GWYIISSGQPVKDYINSVVRHVLLKQGVLS 221
Query: 218 IKVKIMLPWDQQGKNGP 268
IKVKI++ QG+ GP
Sbjct: 222 IKVKIIVRLGSQGQAGP 238
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 61.3 bits (142), Expect = 1e-08
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IMESGA G E+V+SGK+ G R++ KF G + H+G+P + V++ ++ G +G++
Sbjct: 120 IMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVR 179
Query: 224 VKIMLP 241
VKI+ P
Sbjct: 180 VKIIPP 185
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 60.5 bits (140), Expect = 2e-08
Identities = 36/100 (36%), Positives = 51/100 (51%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM +GA+G EV +SGK+RG R+ + KF G + G+P +V V L GVLG+
Sbjct: 119 IMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVY 178
Query: 224 VKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 343
V+IM P PD + + +P+ P E SE
Sbjct: 179 VRIM---------PPDVVLPDKVEIEDPRVTETPAEEASE 209
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 58.8 bits (136), Expect = 6e-08
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
F++ SG RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ +G LGI
Sbjct: 167 FLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGI 226
Query: 221 KVKIM 235
+KIM
Sbjct: 227 NIKIM 231
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 58.8 bits (136), Expect = 6e-08
Identities = 30/77 (38%), Positives = 46/77 (59%)
Frame = +2
Query: 11 YVVLAMVFSAFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRH 190
Y +AM +ME+GA G E+++SGKLR +RA+ K G + +GD + V+ A
Sbjct: 112 YRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGK 171
Query: 191 VLLXQGVLGIKVKIMLP 241
LL +GV G++V I+ P
Sbjct: 172 ALLKRGVYGVEVVIVRP 188
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 56.0 bits (129), Expect = 4e-07
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM +GA G +V VSGKLRG+RA+ K++ G + SG+ + A HVLL GV G++
Sbjct: 125 IMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVE 184
Query: 224 VKIMLPWDQQGKNGP---KKPQPDHILVTEPKDEPVPLEP 334
V I +++ + K P+ + +V + ++E +P
Sbjct: 185 VIISKKSEEERPDDEVRIKSPEEVNEIVQKIREEMQQTQP 224
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 54.8 bits (126), Expect = 9e-07
Identities = 24/66 (36%), Positives = 42/66 (63%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM +GA+G +++SGKL G RA++ KF+ G + + G+P ++Y+ + G +G+
Sbjct: 128 IMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVT 187
Query: 224 VKIMLP 241
V+IM P
Sbjct: 188 VRIMPP 193
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 54.4 bits (125), Expect = 1e-06
Identities = 28/63 (44%), Positives = 39/63 (61%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+ME+GA+G E+VVSGKL +RA+ K G + G + V A HVLL G+ GI+
Sbjct: 130 LMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIE 189
Query: 224 VKI 232
V+I
Sbjct: 190 VRI 192
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 53.6 bits (123), Expect = 2e-06
Identities = 26/92 (28%), Positives = 53/92 (57%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
+ E+ +G EV++SGKL +R++ K+ G++I +G + V A VLL G+ ++
Sbjct: 118 LQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVR 177
Query: 224 VKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP 319
V++ LP D + + + P+ + V + +++P
Sbjct: 178 VRV-LPPDAKLSDRFEVKSPEEVQVKQIENKP 208
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 52.8 bits (121), Expect = 4e-06
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +2
Query: 47 MESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIKV 226
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L G+LG+ V
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179
Query: 227 KIMLP 241
KI+ P
Sbjct: 180 KILNP 184
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 51.6 bits (118), Expect = 8e-06
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM SGA G EV+VSGKL +RAK K G + SG ++ A +L GV G++
Sbjct: 121 IMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVE 180
Query: 224 VKIMLP 241
V I P
Sbjct: 181 VVITKP 186
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 48.8 bits (111), Expect = 6e-05
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = +2
Query: 2 VSLYVVLAMVFSAFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTA 181
+ Y LA + IM +GA G E+V++G+L GQR K+ +F G + +G ++ A
Sbjct: 106 IRAYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRA 165
Query: 182 TRHVLLXQGVLGIKVKIMLP 241
L GV GI V I+ P
Sbjct: 166 FNIAYLKPGVAGIHVTILKP 185
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGIK 223
IM++GARGC +++SGK+ G R + KF G + G+ +++ + G +G
Sbjct: 124 IMDAGARGCLIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCT 183
Query: 224 VKIMLP 241
V+IM P
Sbjct: 184 VRIMRP 189
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 43.2 bits (97), Expect = 0.003
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 44 IMES-GARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
IME A G ++ +SGKLRG R+ K G++ +G + V HV G++GI
Sbjct: 120 IMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGI 179
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 322
+++I D+ K+ K + D + +P+ V
Sbjct: 180 RIRIARR-DKFRKDFEMKAEKDVVPAPKPEHHDV 212
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 41.1 bits (92), Expect = 0.012
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = -2
Query: 235 HDFDLDS*YSLXEKHMSGSSVDVIIARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGT 56
H+ D D+ +L +H+S +V+ ++ ++RVDHE+ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 55 RFHDES 38
H +S
Sbjct: 142 SSHGKS 147
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 39.9 bits (89), Expect = 0.028
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +2
Query: 44 IMESGARGCEVVVSGKLRG-QRAKSMKFVXG-LMIHSGDPCNDYVNTATRHVLLXQGVLG 217
+MESGARG +V++SG+L G ++A++ K + G + +H+ DY R G+LG
Sbjct: 142 VMESGARGVKVILSGRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILG 198
Query: 218 IKVKI 232
IKV +
Sbjct: 199 IKVLV 203
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 35.5 bits (78), Expect = 0.59
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 190 CASXTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 330
CAS RS R Q Q P P A RP PG+ APR
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
>UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3;
Chlamydia|Rep: Putative uncharacterized protein -
Chlamydia trachomatis
Length = 520
Score = 33.1 bits (72), Expect = 3.2
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 107 AKSMKFVXGLM--IHSGDPCNDYVNTAT---RHVLLXQGVLGIKVKIMLPWDQQGKNGPK 271
A ++K+V G++ I + D + +N+AT + + L Q LGI++ I D +
Sbjct: 167 AATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDADTNPDTDQE 226
Query: 272 KPQPDHILVTEPKDEP 319
P P + TE K+ P
Sbjct: 227 TPDPAPVADTEEKESP 242
>UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1;
Caulobacter vibrioides|Rep: Putative uncharacterized
protein - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 1026
Score = 32.7 bits (71), Expect = 4.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 382 DRLRQRRGREGAHFAGRLEGHGLVLGLCYQD 290
DR R+ GR+GA GRL G GL +G+ + +
Sbjct: 491 DRRRRPAGRDGAPVIGRLAGGGLAIGVAHAE 521
>UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia
xyli subsp. xyli|Rep: Serine/threonine kinase -
Leifsonia xyli subsp. xyli
Length = 974
Score = 32.3 bits (70), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 220 QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 330
+G A G A + PE R H G+ A G RAPR
Sbjct: 830 RGARDAAAGAAERHGPEWGPARDHGGDAAAGAVRAPR 866
>UniRef50_UPI0000EBDEE2 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 180
Score = 31.9 bits (69), Expect = 7.3
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 238 AVGP-ARQERPEEATTRPHPGNRAQGRARAPRA 333
AV P AR+ A T P PG RA GR RAP A
Sbjct: 78 AVSPGARKPHFGAAATHPAPGGRAGGRGRAPGA 110
>UniRef50_A3WCD2 Cluster: Putative uncharacterized protein; n=1;
Erythrobacter sp. NAP1|Rep: Putative uncharacterized
protein - Erythrobacter sp. NAP1
Length = 999
Score = 31.9 bits (69), Expect = 7.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 303 SVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCXRSTCLVAVLT 169
S+ R WS G P W+ G LT++P + RS ++A LT
Sbjct: 135 SLVRRWSWASPHGNASPPWTGGTPHLTIVPESVSRRSEIVLADLT 179
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 31.9 bits (69), Expect = 7.3
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 2 VSLYVVLAMVFSAFIMESGARGCEVVVSGKLRG-QRAKSMKFVXGLM-IHSGDPCNDYVN 175
VS + MV ++++GARG + VSG+L G + A+ + G+M +H+ DY
Sbjct: 131 VSFRIAQKMVIKK-VLKAGARGIKTHVSGRLGGVEMAREEGYTQGVMTLHTLRADIDY-- 187
Query: 176 TATRHVLLXQGVLGIKVKI 232
+ + G++G+KV I
Sbjct: 188 -SMQEAHTTYGIIGVKVWI 205
>UniRef50_UPI0000E1FD11 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 162
Score = 31.5 bits (68), Expect = 9.7
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 244 GPARQERPEEATTRPHPGNRAQGRARAPRA 333
G A RP+ AT R P R G A APRA
Sbjct: 59 GSAGHPRPQPATRRGRPRGRGAGHAAAPRA 88
>UniRef50_UPI0000D9D69E Cluster: PREDICTED: similar to
beta1,4-N-acetylgalactosaminyltransferases IV; n=1;
Macaca mulatta|Rep: PREDICTED: similar to
beta1,4-N-acetylgalactosaminyltransferases IV - Macaca
mulatta
Length = 668
Score = 31.5 bits (68), Expect = 9.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 250 ARQERPEEATTRPHPGNRAQGRARAPRA 333
A Q+ P+ TR PG RA RA APRA
Sbjct: 410 AEQQPPKVYVTRVRPGQRASPRAPAPRA 437
>UniRef50_Q8YEE0 Cluster: OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN
OPPD; n=33; Proteobacteria|Rep: OLIGOPEPTIDE TRANSPORT
ATP-BINDING PROTEIN OPPD - Brucella melitensis
Length = 550
Score = 31.5 bits (68), Expect = 9.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 260 NGPKKPQPDHILVTEPKDEPVPLEPTSEV 346
+ P+ P H+L EPK EP +PT++V
Sbjct: 255 DNPQHPYTKHLLAAEPKGEPPLADPTTKV 283
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,759,044
Number of Sequences: 1657284
Number of extensions: 7013819
Number of successful extensions: 27088
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 25515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26986
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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