Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F05
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   122   2e-29
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.7  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   7.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  122 bits (295), Expect = 2e-29
 Identities = 58/98 (59%), Positives = 74/98 (75%)
 Frame = +2

Query: 41  FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
           ++ME+GA+GCEVV+SGKLR  RAKSMKF  G MIHSG P  D++++ATRHVLL QGVLG+
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGV 186

Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 334
           KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 187 KVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 4   LAVRRACYGVLRF 42
           LAVRRA YGVLR+
Sbjct: 115 LAVRRAAYGVLRY 127


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 70   TTTGTRFHDESGEHHSKHD 14
            T+T +R   +SGEHH  H+
Sbjct: 1294 TSTSSRKSSKSGEHHHHHN 1312


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 155 PCNDYVNTATRHVL 196
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 262 RPEEATTRPHP 294
           +PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,364
Number of Sequences: 5004
Number of extensions: 25970
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)