Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F05
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 136 6e-33
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 31 0.47
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 0.47
02_05_0237 + 27095817-27097433 30 1.1
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 2.5
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 4.4
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 28 4.4
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 4.4
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 4.4
08_02_0478 + 17621678-17623768 27 5.8
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 5.8
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 5.8
05_03_0039 - 7621613-7622695 27 7.6
04_01_0360 - 4720997-4721812 27 7.6
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 27 7.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 136 bits (330), Expect = 6e-33
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
F+MESGA+GCEV+VSGKLR QRAKSMKF G MI SG P N Y+++A RHVLL QGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 346
KVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 4 LAVRRACYGVLRF 42
LAVRRACYGVLRF
Sbjct: 115 LAVRRACYGVLRF 127
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 193 ASXTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 324
A T S R G++ + P R+E + T RP PG+ + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 256 QERPEEATTRPHPGNRAQGRARAPR 330
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 318 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 211
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 203 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 346
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 152 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 57
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 391 DSGDRLRQRRGREGAHFAGRLEGHGLVLG 305
+ GD+ + +G EG +G GHG V+G
Sbjct: 164 EEGDKGMKVKGEEGCRASGSDSGHGCVIG 192
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 303 SVTRMWSGCGFFGPFLPCWSH 241
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 266 PKKPQPDHILVTEPKDEPVPLEPTS 340
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
>08_02_0478 + 17621678-17623768
Length = 696
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 23 AMVFSAFIMESGARGCEVVVSGKLRGQRAKSM----KFVXGLMIHSGDPCNDYVNTATRH 190
A+ F + R E S LR ++ K + GL+IHSG ND+V+++
Sbjct: 385 ALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIF 444
Query: 191 VLLXQGVL 214
+ G++
Sbjct: 445 MYSKSGII 452
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -2
Query: 211 YSLXEKHMSGSSVDVIIARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDESG 35
+ L + + GS +++ V R D ++ Y+ G ++ +NN +++G HD G
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGG 797
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 203 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 310
QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 377 QGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 239 PWDQQGKNGPK-KPQPDHILVTEPKDEPVPLEP 334
P + + K PK KP P H EPK EP P EP
Sbjct: 53 PPELEPKPKPKPKPHPKHESKPEPKPEPKP-EP 84
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 391 DSGDRLRQRRGREGAHFAGRLEGHGL 314
D G R RQR G G A R +G GL
Sbjct: 168 DGGRRRRQRDGEAGVEAAARGDGDGL 193
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 193 ASXTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 327
A R+TRN G A + RP + T + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,189
Number of Sequences: 37544
Number of extensions: 204205
Number of successful extensions: 838
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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