Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_F05
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 152 1e-37
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 31 0.42
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 31 0.42
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 3.9
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 3.9
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 3.9
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 3.9
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 3.9
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical p... 27 6.8
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 27 6.8
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 27 6.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 6.8
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 27 9.0
AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical ... 27 9.0
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 152 bits (369), Expect = 1e-37
Identities = 68/101 (67%), Positives = 83/101 (82%)
Frame = +2
Query: 41 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQGVLGI 220
FIMESGA+G EV+VSGKLRGQRAK+MKFV GLMIHSG P NDY+ A RHV L QGV+GI
Sbjct: 127 FIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGI 186
Query: 221 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 343
KVKIMLP+D +G+NGP+ PDH+ + EP++E +P EP S+
Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
Score = 31.1 bits (67), Expect = 0.42
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 4 LAVRRACYGVLRF 42
LAVRRACYGVLRF
Sbjct: 115 LAVRRACYGVLRF 127
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 172 QHCYQTCASXTRSTRNQGQNHVA 240
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 31.1 bits (67), Expect = 0.42
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 172 QHCYQTCASXTRSTRNQGQNHVA 240
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 403 YILSDSGDRLRQRRGREGAHFAGRLEGH 320
Y+ +GD LR R REG+ F +E H
Sbjct: 28 YVHLSAGDLLRAERQREGSEFGALIESH 55
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 403 YILSDSGDRLRQRRGREGAHFAGRLEGH 320
Y+ +GD LR R R G+ + +EGH
Sbjct: 28 YVHLSAGDLLRAERERAGSEYGALIEGH 55
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 205 RSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 330
RSTR +G+ A QE+ E T+ H N+A+ R PR
Sbjct: 430 RSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKS-TRTPR 470
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 275 PQPDHILVTEPKDEPVPL---EPTSE 343
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 318 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 217
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 318 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 217
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 250 ARQERPEEATTRPHPGNRAQGRARAPRADQ 339
A Q+R ++A H G+RA G+ +ADQ
Sbjct: 243 AGQKRTQQADQEQHRGSRAAGQKGTQQADQ 272
>Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 250 ARQERPEEATTRPHPGNRAQGRARAPRADQ 339
A Q+R ++A H G+RA G+ +ADQ
Sbjct: 243 AGQKRTQQADQEQHRGSRAAGQKGTQQADQ 272
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 215 GIKVKIMLPWDQQGKNG-PKKPQPDHIL-VTEPKDEPVPLEPTSEVR 349
G + I P +G G PKKP+P+ ++ V +PK P P + T E R
Sbjct: 379 GSSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRP-PKKATLEKR 424
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 217 NQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 339
N+G +H GP R + R H GNR Q + R+ +Q
Sbjct: 71 NRGHHH---GPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQ 108
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 217 NQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 339
N+G +H GP R + R H GNR Q + R+ +Q
Sbjct: 915 NRGHHH---GPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQ 952
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 232 HVAVGPARQERPEEATTRPH--PGNRAQGRARAPRA 333
H + R ERP A++RP G RAR P A
Sbjct: 43 HASTTNTRMERPSTASSRPRTSTGRAPSARARPPSA 78
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 131 GLMIHSGDPCNDY 169
GL++H G PCN+Y
Sbjct: 691 GLILHPGSPCNNY 703
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 244 GPARQERPEEATTRP--HPGNRAQGRA 318
GP RQ++P++ + +P PG + QG++
Sbjct: 568 GPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 131 GLMIHSGDPCNDY 169
GL++H G PCN+Y
Sbjct: 691 GLILHPGSPCNNY 703
>AF024503-8|AAG24090.2| 283|Caenorhabditis elegans Hypothetical
protein F31F4.11 protein.
Length = 283
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 94 AWSTCQINEVCXWTH 138
AW+TC + C WTH
Sbjct: 17 AWATCVVIIFCCWTH 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,008
Number of Sequences: 27780
Number of extensions: 158648
Number of successful extensions: 626
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -