Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F01
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.5  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   4.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   4.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 271 YDSTSSQNKFFPG 233
           +DS S QN  FPG
Sbjct: 740 FDSRSRQNSSFPG 752


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 150 PRWVVAASILVTSSSLRASTSNPPDIV 70
           P+W  A   L  SSS + S    P IV
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIV 105


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 115 CHQNACCNHPSWGRKC*LPDG 177
           CH N  C     G +C  P G
Sbjct: 269 CHNNGTCLDKVGGFECKCPPG 289


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 131 AATTHLGAENVNFQMETYVYKRRADGTH 214
           AAT HLG+       E++ +   +  TH
Sbjct: 148 AATHHLGSVYSRHPYESWPFNTMSGATH 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,400
Number of Sequences: 336
Number of extensions: 2393
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)