Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_F01
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  SATMSGGLDVLALNEEDVTKML 130
           S TMS  L  LALN +DV K L
Sbjct: 310 STTMSNALYELALN-QDVQKKL 330



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 178 LHLEVNIFCPK 146
           L  E+N FCPK
Sbjct: 330 LREEINTFCPK 340


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 260 RAVVAIENPADVFVISSRPFGQRAVLK 340
           RAVVA     DV VI     G  AVL+
Sbjct: 125 RAVVAQAYKVDVEVIGGASRGCTAVLR 151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 260 RAVVAIENPADVFVISSRPFGQRAVLK 340
           RAVVA     DV VI     G  AVL+
Sbjct: 125 RAVVAQAYKVDVEVIGGASRGCTAVLR 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,334
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)