Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E22
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   159   2e-41
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 2e-41
 Identities = 73/92 (79%), Positives = 83/92 (90%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGLLSFWRGNFANVIRYFRXKXLNFA 508
           VRIPKEQG LS+WRGN ANVIRYF  + LNFA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 510 FXDKYXQVFLGGVDKKT 560
           F DKY QVFLGGVDK T
Sbjct: 93  FKDKYKQVFLGGVDKNT 109



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 320 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 478
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 2e-41
 Identities = 73/92 (79%), Positives = 83/92 (90%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGLLSFWRGNFANVIRYFRXKXLNFA 508
           VRIPKEQG LS+WRGN ANVIRYF  + LNFA
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFA 92



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 510 FXDKYXQVFLGGVDKKT 560
           F DKY QVFLGGVDK T
Sbjct: 93  FKDKYKQVFLGGVDKNT 109



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 320 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 478
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 507 AKLSXLXRKYLMTLAKLPRQNERRPCSLGIRTKASTIPL 391
           ++L  L  K+LM    L        CSL +  + + +PL
Sbjct: 494 SRLLDLCTKFLMHKDSLGLSTATSTCSLAVAKQQNQVPL 532


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 103 LITKLLQISCFKN 141
           +I KLLQI+C+++
Sbjct: 472 IIKKLLQINCYRS 484


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 45  RSSAQWIGAKGRKGP 1
           RS  +++GA+G+K P
Sbjct: 303 RSPFRYLGARGKKNP 317


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 158 VIPHPRVPQLPPRHIHLVKIT 220
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,010
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)