Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E21
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 138 4e-33
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 133 8e-32
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 122 3e-28
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 6e-07
01_01_0357 - 2816650-2817897 29 2.7
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.7
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 8.2
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 8.2
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 138 bits (333), Expect = 4e-33
Identities = 60/90 (66%), Positives = 72/90 (80%)
Frame = +2
Query: 32 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 211
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 212 GVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
G+ AKQPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFV 254
Score = 133 bits (322), Expect = 8e-32
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +2
Query: 47 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 226
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 227 QPNSAIRKCVRVQLIKNGKKVTAFV 301
QPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFV 84
Score = 109 bits (263), Expect = 1e-24
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 476
P DGCLN IE NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 255 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 106 bits (254), Expect = 1e-23
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 470
P DGCLN IE NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 133 bits (322), Expect = 8e-32
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +2
Query: 47 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 226
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 227 QPNSAIRKCVRVQLIKNGKKVTAFV 301
QPNSAIRKC RVQL+KNGKK+ AFV
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFV 84
Score = 109 bits (263), Expect = 1e-24
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 476
P DGCLN IE NDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 85 PNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 122 bits (293), Expect = 3e-28
Identities = 55/83 (66%), Positives = 64/83 (77%)
Frame = +2
Query: 53 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQP 232
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+ AKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 233 NSAIRKCVRVQLIKNGKKVTAFV 301
NSAI KC RVQL+KNGKK+ AFV
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFV 155
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 339 DEVLVAGFGRKGHAVGDIPGVRFKVVK 419
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 387 HRRRDLYDRIPPLVLRRFXRCGLGNRXRGT 298
H+ ++ DR+PPLVLR + G R G+
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPGS 204
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 106 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 204
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 149 KWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKC 253
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -3
Query: 507 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 358
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,209,713
Number of Sequences: 37544
Number of extensions: 380467
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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