Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E21
(578 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 152 1e-36
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 152 1e-36
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 152 1e-36
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 112 1e-24
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 37 0.045
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 37 0.045
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.045
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.045
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.045
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 37 0.045
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 6.8
AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein A... 29 9.0
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 152 bits (368), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +2
Query: 47 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 226
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 227 QPNSAIRKCVRVQLIKNGKKVTAFV 301
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 113 bits (273), Expect = 3e-25
Identities = 54/58 (93%), Positives = 54/58 (93%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 476
P DGCLN IE NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 152 bits (368), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +2
Query: 47 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 226
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 227 QPNSAIRKCVRVQLIKNGKKVTAFV 301
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 113 bits (273), Expect = 3e-25
Identities = 54/58 (93%), Positives = 54/58 (93%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 476
P DGCLN IE NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 152 bits (368), Expect = 1e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +2
Query: 47 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 226
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 227 QPNSAIRKCVRVQLIKNGKKVTAFV 301
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 113 bits (273), Expect = 3e-25
Identities = 54/58 (93%), Positives = 54/58 (93%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 476
P DGCLN IE NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 112 bits (269), Expect = 1e-24
Identities = 53/57 (92%), Positives = 53/57 (92%)
Frame = +3
Query: 303 PXDGCLNHIEXNDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 473
P DGCLN IE NDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 3 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.045
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 155 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 301
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 6.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 133 SPHGYEMEG*PFRWCISRKGHRPRESWCXS*AAQLCHPQMRPC 261
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
>AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein
ABP620 protein.
Length = 5430
Score = 29.5 bits (63), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 418 FTTLKRTPGMSPTA*PLRPNPAT-STSSFXSMWFRQPSXGDECG 290
FT+L+ P + T L+ P T +T S + WFR+P E G
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELG 575
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,757,679
Number of Sequences: 237096
Number of extensions: 2027991
Number of successful extensions: 6177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6177
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -