Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E18
(413 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 86 3e-16
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 72 5e-12
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 70 2e-11
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 63 3e-09
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 59 3e-08
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 59 4e-08
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 54 9e-07
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 52 6e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 48 6e-05
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 48 8e-05
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 47 1e-04
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 46 2e-04
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 46 3e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 45 7e-04
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 44 0.001
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 0.002
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 42 0.007
UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna ... 33 1.8
UniRef50_Q6ARJ1 Cluster: Putative uncharacterized protein; n=1; ... 31 7.1
UniRef50_UPI000056382A Cluster: myosin heavy chain; n=1; Giardia... 31 9.3
UniRef50_Q21QM6 Cluster: Putative uncharacterized protein precur... 31 9.3
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 85.8 bits (203), Expect = 3e-16
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = +2
Query: 17 IQPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDILT 172
+QP LARV VLGRTGSQGQCTQV+VEF+ + SR IIRNVKGPVR+GD+LT
Sbjct: 6 VQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 71.7 bits (168), Expect = 5e-12
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 17 IQPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPV 151
+QP LARV VLGRTGSQGQCTQV+V+F+ + SR IIRNVKGPV
Sbjct: 6 VQPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 69.7 bits (163), Expect = 2e-11
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = +2
Query: 23 PNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 169
P LA+V+ VLGRTGS+G TQV+VEF+ + SR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 62.9 bits (146), Expect = 3e-09
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +2
Query: 35 ARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDILT 172
A VV V+GRTGS+GQ TQV+V+F + R I+RNVKGPVR+GDILT
Sbjct: 8 AVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 59.3 bits (137), Expect = 3e-08
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 20 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGP 148
QP L +V VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 58.8 bits (136), Expect = 4e-08
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 20 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGP 148
QP L +V VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 54.4 bits (125), Expect = 9e-07
Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +2
Query: 35 ARVVXVLGRTGSQGQCTQVKVEFI--GEXSRQIIRNVKGPVRDGDIL 169
A VV +LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 51.6 bits (118), Expect = 6e-06
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 5/49 (10%)
Frame = +2
Query: 41 VVXVLGRTGSQGQCTQVKVEFIG-----EXSRQIIRNVKGPVRDGDILT 172
++ VLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 48.4 bits (110), Expect = 6e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +2
Query: 29 VLARVVXVLGRTGSQGQCTQVKVEFIG--EXSRQIIRNVKGPVRDGDIL 169
V A V+ V+GRTG G QV+ + +G + R ++RNVKGPV+ GDI+
Sbjct: 11 VAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 48.0 bits (109), Expect = 8e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +2
Query: 35 ARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDI 166
ARV+ +L R G++G T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 47.2 bits (107), Expect = 1e-04
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 41 VVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 169
V +L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 46.4 bits (105), Expect = 2e-04
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 35 ARVVXVLGRTGSQGQCTQVKVEFIG--EXSRQIIRNVKGPVRDGDIL 169
A V+ +L RTG G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 46.0 bits (104), Expect = 3e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -2
Query: 208 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKH 50
+QPP R ++ EDVS+ HV+DD A + +EL HLS L L A+H
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 44.8 bits (101), Expect = 7e-04
Identities = 25/50 (50%), Positives = 28/50 (56%)
Frame = +2
Query: 20 QPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 169
Q V VLGRTG G TQVK+E + R I R VKGPV GDI+
Sbjct: 4 QQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -3
Query: 162 SPSRTGPFTFLMI*RLXSPMNSTFT*VHWP*EPVRPSTXTTRA 34
SP RTGP TF M RL S ++ST T H P EPV PST T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +2
Query: 35 ARVVXVLGRTGSQGQCTQVK--VEFIGEXSRQIIRNVKGPVRDGDIL 169
A V+ V+G+TG G+ QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 41.5 bits (93), Expect = 0.007
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +2
Query: 17 IQPNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIR 133
+ P L + VLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 6 VHPVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_Q9IMU3 Cluster: VP1; n=5; Banna virus|Rep: VP1 - Banna virus
Length = 1219
Score = 33.5 bits (73), Expect = 1.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 181 FKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHXHDTSKNV 26
FK+ DV+ G H+S+ L +P + HL+ L +T K D + ++
Sbjct: 963 FKRKNDVNPDGGGIHISEGLKRLMPEYCERHLNELVYKTLDDKVIRDYTSDI 1014
>UniRef50_Q6ARJ1 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 101
Score = 31.5 bits (68), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 2 YKPKWIQPNVLARVVXVLGRTGSQGQ 79
Y P+W+ + +A V L RTG QGQ
Sbjct: 38 YNPRWVVDSYMATVAQGLSRTGQQGQ 63
>UniRef50_UPI000056382A Cluster: myosin heavy chain; n=1; Giardia
lamblia ATCC 50803|Rep: myosin heavy chain - Giardia
lamblia ATCC 50803
Length = 2702
Score = 31.1 bits (67), Expect = 9.3
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 211 LSQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHXH 44
+S P +FT+R +K D V H S+ T G L L L R AKH H
Sbjct: 2004 MSYPNTFTWREEKHHDFQVLSPRRHTSNKKT-GSSFSLALKKEELRQRNELAKHIH 2058
>UniRef50_Q21QM6 Cluster: Putative uncharacterized protein
precursor; n=1; Rhodoferax ferrireducens T118|Rep:
Putative uncharacterized protein precursor - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 240
Score = 31.1 bits (67), Expect = 9.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 178 KKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAK 53
K D+ VT + V+D +T GLP+ +H+S ++ + S K
Sbjct: 113 KMRHDILVTAVYWRVNDHVTNGLPSSQPIHMSQMSRKASEPK 154
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,859,360
Number of Sequences: 1657284
Number of extensions: 4599779
Number of successful extensions: 10582
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10573
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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