Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E18
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    69   2e-13
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    69   2e-13
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   0.87 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.5  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    26   2.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   8.1  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +2

Query: 23  PNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 169
           P  LA+V+ VLGRTGS+G  TQV+VEF+ + SR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +2

Query: 23  PNVLARVVXVLGRTGSQGQCTQVKVEFIGEXSRQIIRNVKGPVRDGDIL 169
           P  LA+V+ VLGRTGS+G  TQV+VEF+ + SR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 96  SSSLGXPAVRSSET*KDPSVTETSSLFLNLNVKL 197
           ++S+  PAV SSET    S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -2

Query: 211 LSQPPSFTFRFKKSEDVS------VTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKH 50
           ++QPPS +F  + ++D S      ++      ++DL    P E +L  + L L ++T   
Sbjct: 422 VAQPPS-SFEKENNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAALGLNSNTGSQ 480

Query: 49  XHDTSKNVGLNP 14
             +T     ++P
Sbjct: 481 PSETQSKPSIDP 492


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 40  CRXSAWPYWFSGPVYSSEGRVH 105
           C+ + WPY+ S P   +E  V+
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVY 193


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 157 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 71
           +T+G     D+++   PN  DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,755
Number of Sequences: 5004
Number of extensions: 19512
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)