Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E18
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    77   5e-15
AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical ...    27   4.1  
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 77.0 bits (181), Expect = 5e-15
 Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
 Frame = +2

Query: 32  LARVVXVLGRTGSQGQCTQVKVEFIG-EXSRQIIRNVKGPVRDGDILT 172
           LARV  V+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 6   LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AF040645-9|AAB94972.2|  197|Caenorhabditis elegans Hypothetical
           protein F52C6.3 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 114 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQH 224
           P   S E  +DP   E+S +  NLNVK+    + L H
Sbjct: 64  PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHH 100


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 13  MDSTQRSCSCRXSAWPYWFSGPVYSSEGRVH 105
           MDS+Q  CSC       W   PV   +G+ H
Sbjct: 112 MDSSQEKCSCTAPCPTEW--NPVCDKKGQTH 140


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 86  QVKVEFIGEXSRQIIRNVKGP-VRD 157
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,132,947
Number of Sequences: 27780
Number of extensions: 111072
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)