Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E17
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...   131   5e-33
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...   131   5e-33
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...   120   7e-30
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...   118   4e-29
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.2  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5   VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 65  STLHLVL 71


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5   VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 65  STLHLVL 71



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 81  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 141 STLHLVL 147



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 157 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 217 STLHLVL 223



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 233 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 292

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 293 STLHLVL 299



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 309 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 368

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 369 STLHLVL 375



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 461 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 520

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 521 STLHLVL 527



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 537 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 596

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 597 STLHLVL 603



 Score =  131 bits (316), Expect = 5e-33
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 613 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 672

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 673 STLHLVL 679



 Score =  128 bits (310), Expect = 3e-32
 Identities = 62/67 (92%), Positives = 64/67 (95%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLE GRTLSDYNIQKE
Sbjct: 385 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 444

Query: 234 STLHLAV 254
           STLHL +
Sbjct: 445 STLHLVL 451


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score =  120 bits (290), Expect = 7e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5   VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score =  118 bits (284), Expect = 4e-29
 Identities = 57/60 (95%), Positives = 58/60 (96%)
 Frame = +3

Query: 54  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
           VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLE GRTLSDYNIQKE
Sbjct: 53  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112



 Score = 84.6 bits (200), Expect = 6e-19
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = +3

Query: 126 KIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLHLAV 254
           KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLHL +
Sbjct: 1   KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 43


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVXHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVXHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVXHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVXHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 525 LEGTYLFVVVFEDHRAVTLPAVVTVXHHR 439
           L GTY   ++F    +V L  VV   HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,592
Number of Sequences: 336
Number of extensions: 2343
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)