Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E17
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 125 4e-30
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 125 4e-30
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 125 4e-30
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 125 4e-30
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 125 4e-30
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 80 2e-16
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 40 2e-04
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 38 0.001
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.005
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 33 0.043
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 31 0.17
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 234 STLHLAV 254
STLHL +
Sbjct: 65 STLHLVL 71
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 234 STLHLAV 254
STLHL +
Sbjct: 65 STLHLVL 71
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 234 STLHLAV 254
STLHL +
Sbjct: 65 STLHLVL 71
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +1
Query: 295 YSTPXXXXXXXXXXXLAVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAVMXDRHYCGKC 474
Y+TP LAVL++YKV+ +G + RLRREC CGA FMA DR YCG+C
Sbjct: 85 YTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRC 142
Query: 475 HSTM 486
H T+
Sbjct: 143 HLTL 146
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 234 STLHLAV 254
STLHL +
Sbjct: 65 STLHLVL 71
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140
Query: 234 STLHLAV 254
STLHL +
Sbjct: 141 STLHLVL 147
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 216
Query: 234 STLHLAV 254
STLHL +
Sbjct: 217 STLHLVL 223
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 292
Query: 234 STLHLAV 254
STLHL +
Sbjct: 293 STLHLVL 299
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 368
Query: 234 STLHLAV 254
STLHL +
Sbjct: 369 STLHLVL 375
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 125 bits (302), Expect = 4e-30
Identities = 60/67 (89%), Positives = 64/67 (95%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Query: 234 STLHLAV 254
STLHL +
Sbjct: 65 STLHLVL 71
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/64 (48%), Positives = 39/64 (60%)
Frame = +1
Query: 295 YSTPXXXXXXXXXXXLAVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAVMXDRHYCGKC 474
Y+TP LAVL++YKV+ +G + RLRREC CGA FMA DR YCG+C
Sbjct: 85 YTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRC 142
Query: 475 HSTM 486
H T+
Sbjct: 143 HLTL 146
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 80.2 bits (189), Expect = 2e-16
Identities = 32/67 (47%), Positives = 50/67 (74%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ + Y+++
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGG 64
Query: 234 STLHLAV 254
S LHL +
Sbjct: 65 SVLHLVL 71
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 69 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 242
GK LE+EP++T +K ++ +PP +Q++I G QL+ L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +3
Query: 72 KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 233
K + +V I +K KIQ ++ +Q+LI++G+ L +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 51 SVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQK 230
++K + + V+ ++ +K I I +QRLI+AG+ L+ +L Y IQ
Sbjct: 7 TIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQD 66
Query: 231 ESTLHL 248
++HL
Sbjct: 67 GHSIHL 72
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 32.7 bits (71), Expect = 0.043
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRL---IFAGKQLEXGRTLSDYNI 224
++ + ++ ++EV+ ++ N+ + D+ +P N + L + G +L T +DY I
Sbjct: 4 LQIIASQSYSIEVDEHSSLGNIFDLLSDQGILPKNAKSLHAFYYHGTRLNMNMTCADYGI 63
Query: 225 QKESTLHLA 251
+S +H+A
Sbjct: 64 IHDSAVHIA 72
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 564 NPSYTAVASVSYRLEGTYLFVVVFEDHRAVTLPAV 460
NP+YT SY L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 231 PSGYCSPRGYVHXPAAFQQRSTSVDWEGF 145
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 153 PNQQRLIFAGKQLEXGRTLSDYNI 224
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,288
Number of Sequences: 5004
Number of extensions: 38943
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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