Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E14
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.51 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.8  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 299 PNTIXSXNGTGICPCICRLASGHVEI 376
           PN I   NGTG+     RLA+G + +
Sbjct: 161 PNNIILGNGTGVQLVPTRLANGDIAL 186


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 61  RPPLFLNRKGGMXRKDMRHHKNV 129
           RPPL         R++++HH N+
Sbjct: 366 RPPLTREEIHEKARENLKHHANL 388


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 363  GTWRLVIL*RSANADLCPKQLDSM 434
            GT+  +I     + DLC K +D M
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEM 1331


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 363  GTWRLVIL*RSANADLCPKQLDSM 434
            GT+  +I     + DLC K +D M
Sbjct: 1308 GTFSQIITKTQLDFDLCSKPIDEM 1331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,183
Number of Sequences: 336
Number of extensions: 1983
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)